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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA993416" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA993416 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27474750 27474750 PRJNA993416_P_NODE_15683_length_242_cov_0.952663_g15578_i0 PRJNA993416 15683 242 0.952663 2.30544446 Anura 8342 Chordata Chordata 62 5.94e-9   NR XP_053548577.1 8345 g15578 i0 52.9 66.8181818181818 70 33 86.8 0 13 222 551 620 XP_053548577.1 ubiquitin thioesterase ZRANB1 [Bombina bombina] diamond 16170 62 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
28384504 28384504 PRJNA993416_P_NODE_2806_length_511_cov_6.374429_g2701_i0 PRJNA993416 2806 511 6.374429 32.57333219 Bufotes viridis 30338 Chordata Chordata 80.5 4.64e-15   NR CAK8641430.1 30338 g2701 i0 53.8 0.469667318982387 80 35 46.4 2 1 237 142 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 240 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28731900 28731900 PRJNA993416_P_NODE_10287_length_271_cov_2.318182_g10182_i0 PRJNA993416 10287 271 2.318182 6.28227322 Apaloderma vittatum 57397 Chordata Chordata 59.3 9.7e-9   NR XP_009873761.1 57397 g10182 i0 58.3 0.929889298892989 84 35 93 0 15 266 1 84 XP_009873761.1 PREDICTED: F-box/LRR-repeat protein 14, partial [Apaloderma vittatum] diamond 252 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Trogoniformes Trogonidae Apaloderma Apaloderma vittatum
28858049 28858049 PRJNA993416_P_NODE_2008_length_609_cov_3.503731_g1906_i0 PRJNA993416 2008 609 3.503731 21.33772179 Bufotes viridis 30338 Chordata Chordata 110 5.35e-26   NR CAK8641430.1 30338 g1906 i0 52.3 0.916256157635468 111 51 54.2 2 6 335 111 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 558 110 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28895490 28895490 PRJNA993416_P_NODE_12748_length_250_cov_0.870056_g12643_i0 PRJNA993416 12748 250 0.870056 2.17514 Chordata 7711 Chordata Chordata 169 6.78e-48   NR KAJ1131131.1 8319 g12643 i0 100 113.16 82 0 98.4 0 248 3 265 346 KAJ1131131.1 hypothetical protein NDU88_009474 [Pleurodeles waltl] diamond 28290 169 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
29047705 29047705 PRJNA993416_P_NODE_12388_length_251_cov_0.865169_g12283_i0 PRJNA993416 12388 251 0.865169 2.17157419 Manis pentadactyla 143292 Chordata Chordata 108 5.899999999999999e-26   NR KAI5133326.1 143292 g12283 i0 63.4 40.1832669322709 82 30 98 0 1 246 262 343 KAI5133326.1 Tubulin Alpha-3D Chain [Manis pentadactyla] diamond 10086 108 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis pentadactyla
29394967 29394967 PRJNA993416_P_NODE_2009_length_609_cov_3.324627_g1906_i1 PRJNA993416 2009 609 3.324627 20.24697843 Bufotes viridis 30338 Chordata Chordata 110 5.35e-26   NR CAK8641430.1 30338 g1906 i1 52.3 0.916256157635468 111 51 54.2 2 6 335 111 220 CAK8641430.1 Transposable element Tc3 transposase [Bufotes viridis] diamond 558 110 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30057932 30057932 PRJNA993416_P_NODE_16591_length_229_cov_2.448718_g16486_i0 PRJNA993416 16591 229 2.448718 5.60756422 Polypterus senegalus 55291 Chordata Chordata 148 1.9e-39   NR KAG2469874.1 55291 g16486 i0 100 25.5458515283843 75 0 98.3 0 227 3 2122 2196 KAG2469874.1 SPTN1 protein, partial [Polypterus senegalus] diamond 5850 148 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30253820 30253820 PRJNA993416_P_NODE_12072_length_253_cov_4.211111_g11967_i0 PRJNA993416 12072 253 4.211111 10.65411083 Amphibia 8292 Chordata Chordata 102 1.87e-23   NR KAJ1132056.1 8319 g11967 i0 65.1 36.4150197628459 83 29 98.4 0 3 251 162 244 KAJ1132056.1 hypothetical protein NDU88_010386 [Pleurodeles waltl] diamond 9213 103 0.990291262135922 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30406039 30406039 PRJNA993416_P_NODE_9953_length_274_cov_3.129353_g9848_i0 PRJNA993416 9953 274 3.129353 8.57442722 Polypterus senegalus 55291 Chordata Chordata 111 2.25e-26   NR KAG2463490.1 55291 g9848 i0 65.2 68.6058394160584 89 31 97.4 0 269 3 101 189 KAG2463490.1 PRPS1 pyrophosphokinase, partial [Polypterus senegalus] diamond 18798 111 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31069344 31069344 PRJNA993416_P_NODE_16335_length_241_cov_0.821429_g16230_i0 PRJNA993416 16335 241 0.821429 1.97964389 Rhinatrema bivittatum 194408 Chordata Chordata 61.6 7.99e-9   NR XP_029463040.1 194408 g16230 i0 52.3 7.28215767634855 65 31 80.9 0 240 46 188 252 XP_029463040.1 methionine--tRNA ligase, mitochondrial isoform X2 [Rhinatrema bivittatum] diamond 1755 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
31195111 31195111 PRJNA993416_P_NODE_15655_length_242_cov_1.366864_g15550_i0 PRJNA993416 15655 242 1.366864 3.30781088 Bufotes viridis 30338 Chordata Chordata 173 2.0099999999999998e-52   NR CAK8659804.1 30338 g15550 i0 97.5 18.8057851239669 80 2 99.2 0 241 2 115 194 CAK8659804.1 Proteasome subunit beta type-3, partial [Bufotes viridis] diamond 4551 174 0.994252873563218 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31796258 31796258 PRJNA993416_P_NODE_14397_length_246_cov_0.890173_g14292_i0 PRJNA993416 14397 246 0.890173 2.18982558 Monodon monoceros 40151 Chordata Chordata 119 1.16e-31   NR TKC53834.1 40151 g14292 i0 88.6 61.8780487804878 70 6 85.4 1 246 37 82 149 TKC53834.1 hypothetical protein EI555_018584, partial [Monodon monoceros] diamond 15222 119 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Monodontidae Monodon Monodon monoceros
31897263 31897263 PRJNA993416_P_NODE_12717_length_250_cov_1.305085_g12612_i0 PRJNA993416 12717 250 1.305085 3.2627125 Aves 8782 Chordata Chordata 116 1.7699999999999999e-28   NR XP_040431241.1 8869 g12612 i0 94.4 12.792 54 3 64.8 0 88 249 114 167 XP_040431241.1 actin-related protein 2/3 complex subunit 1B isoform X1 [Cygnus olor] diamond 3198 116 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cygnus Cygnus olor
32467065 32467065 PRJNA993416_P_NODE_16619_length_227_cov_3.474026_g16514_i0 PRJNA993416 16619 227 3.474026 7.88603902 Mammalia 40674 Chordata Chordata 77.4 1.52e-14   NR XP_006895653.1 28737 g16514 i0 58.1 233.484581497797 74 31 97.8 0 2 223 172 245 XP_006895653.1 PREDICTED: tubulin alpha-4A chain-like [Elephantulus edwardii] diamond 53001 77.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Macroscelidea Macroscelididae Elephantulus Elephantulus edwardii
32876570 32876570 PRJNA993416_P_NODE_8520_length_287_cov_1.079439_g8415_i0 PRJNA993416 8520 287 1.079439 3.09798993 Zosterops 36298 Chordata Chordata 183 1.3799999999999999e-52   NR TRZ09930.1 364589 g8415 i0 88.4 24.8257839721254 95 11 99.3 0 2 286 426 520 TRZ09930.1 hypothetical protein HGM15179_017189 [Zosterops borbonicus] diamond 7125 184 0.994565217391304 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;