RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA986547" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA986547 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7352050 7352050 PRJNA986547_P_NODE_9466_length_248_cov_2.091429_g9384_i0 PRJNA986547 9466 248 2.091429 5.18674392 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 150 4.999999999999998e-44   NR XP_004349728.1 1257118 g9384 i0 90.8 0.919354838709677 76 7 91.9 0 21 248 1 76 XP_004349728.1 Rho family, small GTP binding protein Rac3, putative [Acanthamoeba castellanii str. Neff] diamond 228 150 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27469002 27469002 PRJNA986547_P_NODE_2763_length_310_cov_4.459916_g2681_i0 PRJNA986547 2763 310 4.459916 13.8257396 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 48.1 9.87e-4   NR XP_004340151.1 1257118 g2681 i0 42.1 0.551612903225806 57 33 55.2 0 171 1 269 325 XP_004340151.1 metal cation transporter, ZIP subfamily protein [Acanthamoeba castellanii str. Neff] diamond 171 48.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29552511 29552511 PRJNA986547_P_NODE_6010_length_269_cov_4.056122_g5928_i0 PRJNA986547 6010 269 4.056122 10.91096818 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 149 2.8699999999999998e-43   NR XP_004344656.1 1257118 g5928 i0 82 2.98884758364312 89 16 99.3 0 2 268 69 157 XP_004344656.1 Rasrelated protein Rap-1, putative [Acanthamoeba castellanii str. Neff] diamond 804 149 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29678684 29678684 PRJNA986547_P_NODE_15850_length_210_cov_6.518248_g15768_i0 PRJNA986547 15850 210 6.518248 13.6883208 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 75.9 1.15e-15   NR 1F2K_A 5755 g15768 i0 73.5 1.4 49 13 70 0 3 149 77 125 1F2K_A Chain A, PROFILIN II [Acanthamoeba castellanii] diamond 294 75.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31226960 31226960 PRJNA986547_P_NODE_14675_length_222_cov_8.214765_g14593_i0 PRJNA986547 14675 222 8.214765 18.2367783 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.8 1.24e-18   NR XP_004342575.1 1257118 g14593 i0 56 1.01351351351351 75 32 100 1 1 222 109 183 XP_004342575.1 Synapsin, ATP binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 225 87.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31796218 31796218 PRJNA986547_P_NODE_15837_length_210_cov_7.350365_g15755_i0 PRJNA986547 15837 210 7.350365 15.4357665 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 60.5 1.32e-8   NR XP_004335273.1 1257118 g15755 i0 49.2 0.842857142857143 59 29 84.3 1 200 24 367 424 XP_004335273.1 uncharacterized protein ACA1_147690 [Acanthamoeba castellanii str. Neff] diamond 177 60.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31891313 31891313 PRJNA986547_P_NODE_5157_length_277_cov_8.328431_g5075_i0 PRJNA986547 5157 277 8.328431 23.06975387 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 115 4.14e-28   NR XP_004341586.1 1257118 g5075 i0 56 1.97111913357401 91 40 98.6 0 3 275 288 378 XP_004341586.1 elongation factor 1-gamma family protein [Acanthamoeba castellanii str. Neff] diamond 546 115 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31891314 31891314 PRJNA986547_P_NODE_5737_length_272_cov_1.316583_g5655_i0 PRJNA986547 5737 272 1.316583 3.58110576 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 80.9 1.87e-15   NR XP_004367884.1 1257118 g5655 i0 50 0.970588235294118 88 41 97.1 2 5 268 252 336 XP_004367884.1 PCI domain containing protein [Acanthamoeba castellanii str. Neff] diamond 264 80.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;