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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA983848" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 30 ✖

tax_kingdom 1

bioproject 1

  • PRJNA983848 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
967806 967806 PRJNA983848_P_NODE_149281_length_247_cov_0.896552_g143398_i0 PRJNA983848 149281 247 0.896552 2.21448344 Kocuria carniphila 262208 Bacteria Bacteria 117 1.15e-29   NR WP_129699920.1 262208 g143398 i0 95.2 0.765182186234818 63 3 76.5 0 58 246 1 63 WP_129699920.1 hypothetical protein [Kocuria carniphila] diamond 189 117 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria carniphila
1271596 1271596 PRJNA983848_P_NODE_152161_length_246_cov_0.901734_g146278_i0 PRJNA983848 152161 246 0.901734 2.21826564 uncultured Georgenia sp. 378209 Bacteria Bacteria 90.1 5.28e-19   NR WP_299277056.1 378209 g146278 i0 61.7 0.98780487804878 81 31 98.8 0 245 3 248 328 WP_299277056.1 MFS transporter [uncultured Georgenia sp.] diamond 243 90.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Bogoriellaceae Georgenia uncultured Georgenia sp.
2241985 2241985 PRJNA983848_P_NODE_116442_length_278_cov_1.517073_g110559_i0 PRJNA983848 116442 278 1.517073 4.21746294 Microbacterium album 2053191 Bacteria Bacteria 112 1.59e-26   NR GGH44521.1 2053191 g110559 i0 68.7 0.89568345323741 83 26 89.6 0 30 278 383 465 GGH44521.1 hypothetical protein GCM10010921_19240 [Microbacterium album] diamond 249 112 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium album
2242814 2242814 PRJNA983848_P_NODE_140262_length_252_cov_0.871508_g134379_i0 PRJNA983848 140262 252 0.871508 2.19620016 Janibacter hoylei 364298 Bacteria Bacteria 73.6 3.12e-15   NR WP_007928216.1 364298 g134379 i0 97.5 0.476190476190476 40 1 47.6 0 122 3 1 40 WP_007928216.1 hypothetical protein [Janibacter hoylei] diamond 120 73.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Janibacter Janibacter hoylei
17545626 17545626 PRJNA983848_P_NODE_145994_length_249_cov_0.886364_g140111_i0 PRJNA983848 145994 249 0.886364 2.20704636 Brevibacterium sediminis 1857024 Bacteria Bacteria 154 2.4999999999999997e-44   NR WP_181271509.1 1857024 g140111 i0 98.8 1.97590361445783 82 1 98.8 0 2 247 11 92 WP_181271509.1 LysR family transcriptional regulator [Brevibacterium sediminis] diamond 492 154 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Brevibacteriaceae Brevibacterium Brevibacterium sediminis
25193917 25193917 PRJNA983848_P_NODE_145780_length_249_cov_0.886364_g139897_i0 PRJNA983848 145780 249 0.886364 2.20704636 Nocardioides caldifontis 2588938 Bacteria Bacteria 126 2.62e-33   NR WP_148575036.1 2588938 g139897 i0 83.3 0.867469879518072 72 12 86.7 0 249 34 245 316 WP_148575036.1 zinc metalloprotease HtpX [Nocardioides caldifontis] diamond 216 126 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides Nocardioides caldifontis
26804746 26804746 PRJNA983848_P_NODE_161221_length_240_cov_2.730539_g155338_i0 PRJNA983848 161221 240 2.730539 6.5532936 Adlercreutzia equolifaciens 446660 Bacteria Bacteria 41.2 0.0148   NR GJC77151.1 446660 g155338 i0 45.1 0.6375 51 26 63.8 1 240 88 6 54 GJC77151.1 hypothetical protein Aeq9CBH6_24860 [Adlercreutzia equolifaciens] diamond 153 41.2 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae Adlercreutzia Adlercreutzia equolifaciens
27215783 27215783 PRJNA983848_P_NODE_146262_length_249_cov_0.886364_g140379_i0 PRJNA983848 146262 249 0.886364 2.20704636 Lawsonella clevelandensis 1528099 Bacteria Bacteria 173 6.24e-51   NR WP_303678801.1 1528099 g140379 i0 100 2 83 0 100 0 1 249 244 326 WP_303678801.1 alpha/beta hydrolase [Lawsonella clevelandensis] diamond 498 173 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
28131962 28131962 PRJNA983848_P_NODE_143965_length_250_cov_0.881356_g138082_i0 PRJNA983848 143965 250 0.881356 2.20339 Solirubrobacteraceae bacterium 2586742 Bacteria Bacteria 50.1 3.78e-5   NR HMI69186.1 2586742 g138082 i0 70 0.36 30 9 36 0 92 3 17 46 HMI69186.1 DoxX family protein [Solirubrobacteraceae bacterium] diamond 90 50.1 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
28169357 28169357 PRJNA983848_P_NODE_142245_length_251_cov_0.876404_g136362_i0 PRJNA983848 142245 251 0.876404 2.19977404 Cutibacterium 1912216 Bacteria Bacteria 157 1.06e-46   NR WP_069101248.1 33010 g136362 i0 91.6 7.92430278884462 83 7 99.2 0 1 249 39 121 WP_069101248.1 energy-coupling factor transporter transmembrane component T family protein [Cutibacterium avidum] diamond 1989 157 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium avidum
28384358 28384358 PRJNA983848_P_NODE_158446_length_243_cov_0.917647_g152563_i0 PRJNA983848 158446 243 0.917647 2.22988221 Aeromicrobium massiliense 1464554 Bacteria Bacteria 131 6.36e-35   NR WP_019146462.1 1464554 g152563 i0 80 0.987654320987654 80 16 98.8 0 240 1 9 88 WP_019146462.1 AbrB family transcriptional regulator [Aeromicrobium massiliense] diamond 240 131 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium massiliense
28479174 28479174 PRJNA983848_P_NODE_62766_length_408_cov_1.874627_g56884_i0 PRJNA983848 62766 408 1.874627 7.64847816 Mycobacterium sp. AT1 1961706 Bacteria Bacteria 45.8 0.0129   NR WP_142271499.1 1961706 g56884 i0 31.9 0.669117647058823 91 60 66.9 1 333 61 144 232 WP_142271499.1 hypothetical protein [Mycobacterium sp. AT1] diamond 273 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp. AT1
28573747 28573747 PRJNA983848_P_NODE_100387_length_302_cov_1.606987_g94504_i0 PRJNA983848 100387 302 1.606987 4.85310074 Microbacterium sp. Leaf288 1736323 Bacteria Bacteria 40.8 0.0486   NR KQP69532.1 1736323 g94504 i0 33.3 0.536423841059603 54 35 52.6 1 201 43 14 67 KQP69532.1 hypothetical protein ASF40_16875 [Microbacterium sp. Leaf288] diamond 162 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. Leaf288
28573754 28573754 PRJNA983848_P_NODE_120787_length_272_cov_2.351759_g114904_i0 PRJNA983848 120787 272 2.351759 6.39678448 Mycolicibacterium tokaiense 39695 Bacteria Bacteria 42.4 0.0476   NR WP_115282004.1 39695 g114904 i0 38.9 0.595588235294118 54 33 59.6 0 263 102 33 86 WP_115282004.1 hypothetical protein [Mycolicibacterium tokaiense] diamond 162 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium tokaiense
28763176 28763176 PRJNA983848_P_NODE_146007_length_249_cov_0.886364_g140124_i0 PRJNA983848 146007 249 0.886364 2.20704636 Actinomycetota bacterium 2900548 Bacteria Bacteria 43.5 0.0213   NR TSA55229.1 2900548 g140124 i0 34.7 1.62650602409639 72 31 86.7 3 219 4 270 325 TSA55229.1 MAG: FAD-binding protein [Actinomycetota bacterium] diamond 405 43.5 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29615446 29615446 PRJNA983848_P_NODE_147850_length_248_cov_0.891429_g141967_i0 PRJNA983848 147850 248 0.891429 2.21074392 Frankiaceae bacterium 2654182 Bacteria Bacteria 43.9 0.0148   NR HSP38353.1 2654182 g141967 i0 43.2 0.532258064516129 44 25 53.2 0 70 201 46 89 HSP38353.1 NADPH:quinone reductase [Frankiaceae bacterium] diamond 132 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae   Frankiaceae bacterium
29646967 29646967 PRJNA983848_P_NODE_154610_length_244_cov_2.502924_g148727_i0 PRJNA983848 154610 244 2.502924 6.10713456 Streptosporangiaceae bacterium 2339230 Bacteria Bacteria 43.5 0.0191   NR HEX4063286.1 2339230 g148727 i0 55.2 0.35655737704918 29 13 35.7 0 230 144 277 305 HEX4063286.1 CehA/McbA family metallohydrolase [Streptosporangiaceae bacterium] diamond 87 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae   Streptosporangiaceae bacterium
29678609 29678609 PRJNA983848_P_NODE_149390_length_247_cov_0.896552_g143507_i0 PRJNA983848 149390 247 0.896552 2.21448344 Cutibacterium acnes 1747 Bacteria Bacteria 159 5.71e-47   NR HCW42198.1 1747 g143507 i0 96.3 6.97165991902834 82 3 99.6 0 246 1 143 224 HCW42198.1 mannose-6-phosphate isomerase, class I [Cutibacterium acnes] diamond 1722 159 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
30026484 30026484 PRJNA983848_P_NODE_156411_length_244_cov_0.912281_g150528_i0 PRJNA983848 156411 244 0.912281 2.22596564 Corynebacterium glucuronolyticum 39791 Bacteria Bacteria 59.3 5.2100000000000003e-08   NR MCI6207260.1 39791 g150528 i0 93.1 0.35655737704918 29 2 35.7 0 3 89 489 517 MCI6207260.1 MFS transporter [Corynebacterium glucuronolyticum] diamond 87 59.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium glucuronolyticum
30026485 30026485 PRJNA983848_P_NODE_159771_length_242_cov_0.923077_g153888_i0 PRJNA983848 159771 242 0.923077 2.23384634 Streptomyces actuosus 1885 Bacteria Bacteria 149 1.1e-42   NR WP_205387437.1 1885 g153888 i0 91.1 0.979338842975207 79 7 97.9 0 238 2 25 103 WP_205387437.1 hypothetical protein, partial [Streptomyces actuosus] diamond 237 149 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces actuosus
30531793 30531793 PRJNA983848_P_NODE_143433_length_250_cov_0.881356_g137550_i0 PRJNA983848 143433 250 0.881356 2.20339 Lawsonella clevelandensis 1528099 Bacteria Bacteria 163 6.42e-45   NR WP_306559137.1 1528099 g137550 i0 100 0.996 83 0 99.6 0 249 1 58 140 WP_306559137.1 glycosyltransferase [Lawsonella clevelandensis] diamond 249 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
30531798 30531798 PRJNA983848_P_NODE_51853_length_475_cov_2.599502_g45976_i0 PRJNA983848 51853 475 2.599502 12.3476345 Actinomycetota bacterium 2900548 Bacteria Bacteria 44.7 0.0146   NR MFM8847036.1 2900548 g45976 i0 36.8 0.36 57 33 34.7 2 169 5 23 78 MFM8847036.1 alpha-L-rhamnosidase C-terminal domain-containing protein [Actinomycetota bacterium] diamond 171 44.7 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
30569182 30569182 PRJNA983848_P_NODE_132173_length_259_cov_1.462366_g126290_i0 PRJNA983848 132173 259 1.462366 3.78752794 Leucobacter 55968 Bacteria Bacteria 146 6.909999999999999e-40   NR WP_208045115.1 1289170 g126290 i0 87.1 2.95366795366795 85 11 98.5 0 3 257 327 411 WP_208045115.1 hemolysin family protein [Leucobacter ruminantium] diamond 765 146 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter ruminantium
30594928 30594928 PRJNA983848_P_NODE_155913_length_244_cov_0.912281_g150030_i0 PRJNA983848 155913 244 0.912281 2.22596564 Actinosynnema 40566 Bacteria Bacteria 65.1 4.96e-10   NR WP_253850429.1 40566 g150030 i0 50 0.836065573770492 68 28 82.4 2 238 38 20 82 WP_253850429.1 MULTISPECIES: XRE family transcriptional regulator [Actinosynnema] diamond 204 65.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinosynnema  
30942776 30942776 PRJNA983848_P_NODE_149354_length_247_cov_0.896552_g143471_i0 PRJNA983848 149354 247 0.896552 2.21448344 Cutibacterium namnetense 1574624 Bacteria Bacteria 166 1.14e-47   NR WP_115938976.1 1574624 g143471 i0 100 0.995951417004049 82 0 99.6 0 2 247 250 331 WP_115938976.1 O-antigen ligase family protein [Cutibacterium namnetense] diamond 246 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium namnetense
31131897 31131897 PRJNA983848_P_NODE_161375_length_240_cov_2.203593_g155492_i0 PRJNA983848 161375 240 2.203593 5.2886232 Bifidobacterium sp. ESL 41200 Bacteria Bacteria 44.3 0.0099   NR WP_277149501.1 2983230 g155492 i0 32.8 0.8375 67 33 77.5 3 232 47 47 106 WP_277149501.1 ATP-binding protein [Bifidobacterium sp. ESL0775] diamond 201 44.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Bifidobacteriales Bifidobacteriaceae Bifidobacterium Bifidobacterium sp. ESL0775
31511872 31511872 PRJNA983848_P_NODE_91736_length_318_cov_2.665306_g85853_i0 PRJNA983848 91736 318 2.665306 8.47567308 Streptosporangium sp. NPDC 47486 Bacteria Bacteria 45.1 0.0113   NR WP_363943123.1 3155752 g85853 i0 47.7 0.415094339622642 44 22 40.6 1 185 313 212 255 WP_363943123.1 hypothetical protein [Streptosporangium sp. NPDC051022] diamond 132 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Streptosporangiaceae Streptosporangium Streptosporangium sp. NPDC051022
31517795 31517795 PRJNA983848_P_NODE_153476_length_245_cov_0.906977_g147593_i0 PRJNA983848 153476 245 0.906977 2.22209365 Trueperella 1069494 Bacteria Bacteria 83.2 2.1e-16   NR WP_354671976.1 1661 g147593 i0 49.3 7.16326530612245 73 37 89.4 0 231 13 48 120 WP_354671976.1 relaxase/mobilization nuclease domain-containing protein [Trueperella pyogenes] diamond 1755 84 0.990476190476191 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Trueperella Trueperella pyogenes
31922850 31922850 PRJNA983848_P_NODE_142397_length_251_cov_0.870787_g136514_i0 PRJNA983848 142397 251 0.870787 2.18567537 Candidatus Nanopelagicales bacterium 2518612 Bacteria Bacteria 60.8 6.72e-9   NR MDC3376799.1 2518612 g136514 i0 46.6 1.74501992031873 73 36 83.7 1 40 249 54 126 MDC3376799.1 response regulator transcription factor [Candidatus Nanopelagicales bacterium] diamond 438 60.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Candidatus Nanopelagicales     Candidatus Nanopelagicales bacterium
32366048 32366048 PRJNA983848_P_NODE_153899_length_245_cov_0.906977_g148016_i0 PRJNA983848 153899 245 0.906977 2.22209365 Lawsonella clevelandensis 1528099 Bacteria Bacteria 158 7.83e-44   NR WP_306558780.1 1528099 g148016 i0 100 0.991836734693878 81 0 99.2 0 244 2 195 275 WP_306558780.1 polyprenol phosphomannose-dependent alpha 1,6 mannosyltransferase MptB [Lawsonella clevelandensis] diamond 243 158 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;