RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA983848" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA983848 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28226248 28226248 PRJNA983848_P_NODE_143786_length_250_cov_0.881356_g137903_i0 PRJNA983848 143786 250 0.881356 2.20339 Truepera radiovictrix 332249 Bacteria Bacteria 105 2.5299999999999998e-24   NR WP_013178227.1 332249 g137903 i0 62 0.948 79 30 94.8 0 4 240 258 336 WP_013178227.1 hypothetical protein [Truepera radiovictrix] diamond 237 105 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae Truepera Truepera radiovictrix
29211482 29211482 PRJNA983848_P_NODE_127469_length_264_cov_2.041885_g121586_i0 PRJNA983848 127469 264 2.041885 5.3905764 Bacteria 2 Bacteria Bacteria 47 0.00165   NR HPC24980.1 1871331 g121586 i0 42.9 1.43181818181818 63 35 70.5 1 252 67 606 668 HPC24980.1 hypothetical protein [Fervidobacterium sp.] diamond 378 47 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
30721331 30721331 PRJNA983848_P_NODE_147114_length_248_cov_1.394286_g141231_i0 PRJNA983848 147114 248 1.394286 3.45782928 Deinococcus taklimakanensis 536443 Bacteria Bacteria 155 6.239999999999999e-43   NR WP_386843615.1 536443 g141231 i0 100 0.991935483870968 82 0 99.2 0 1 246 110 191 WP_386843615.1 DUF4129 domain-containing protein [Deinococcus taklimakanensis] diamond 246 155 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus taklimakanensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;