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contig_metadata

33 rows where analysis = "diamond", bioproject = "PRJNA983838" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA983838 · 33 ✖

analysis 1

  • diamond · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8618152 8618152 PRJNA983838_P_NODE_35207_length_581_cov_1.710630_g32858_i0 PRJNA983838 35207 581 1.71063 9.9387603 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 306 1.3899999999999995e-101   NR CAG5104289.1 34765 g32858 i0 77.7 24.9655765920826 193 42 99.1 1 6 581 99 291 CAG5104289.1 Oidioi.mRNA.OKI2018_I69.chr1.g1180.t1.cds [Oikopleura dioica] diamond 14505 308 0.993506493506494 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
13719428 13719428 PRJNA983838_P_NODE_82011_length_295_cov_1.279279_g79644_i0 PRJNA983838 82011 295 1.279279 3.77387305 root 1 Root_unresolved Root_unresolved 96.3 1.09e-20   NR EGV96793.1 10029 g79644 i0 53.2 3.84406779661017 94 37 88.5 2 4 264 598 691 EGV96793.1 Poly [ADP-ribose] polymerase 8 [Cricetulus griseus] diamond 1134 96.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
16268251 16268251 PRJNA983838_P_NODE_52973_length_411_cov_1.233728_g50606_i0 PRJNA983838 52973 411 1.233728 5.07062208 Rousettus aegyptiacus 9407 Chordata Chordata 168 1.19e-49   NR KAF6506212.1 9407 g50606 i0 54.2 1.90510948905109 131 56 93.4 2 28 411 16 145 KAF6506212.1 hypothetical protein HJG63_008010 [Rousettus aegyptiacus] diamond 783 168 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
26741039 26741039 PRJNA983838_P_NODE_67081_length_341_cov_3.518657_g64714_i0 PRJNA983838 67081 341 3.518657 11.99862037 Polypterus senegalus 55291 Chordata Chordata 43.5 0.0217   NR KAG2471189.1 55291 g64714 i0 57.1 0.30791788856305 35 15 30.8 0 139 243 92 126 KAG2471189.1 TCB1 transposase, partial [Polypterus senegalus] diamond 105 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
26804729 26804729 PRJNA983838_P_NODE_93901_length_270_cov_2.314721_g91534_i0 PRJNA983838 93901 270 2.314721 6.2497467 Rattus norvegicus 10116 Chordata Chordata 97.1 9.799999999999999e-24   NR EDL85443.1 10116 g91534 i0 100 0.5 45 0 50 0 135 1 22 66 EDL85443.1 rCG51720, partial [Rattus norvegicus] diamond 135 97.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
26962857 26962857 PRJNA983838_P_NODE_85482_length_287_cov_1.420561_g83115_i0 PRJNA983838 85482 287 1.420561 4.07701007 Cricetulus griseus 10029 Chordata Chordata 43.5 0.00303   NR EGW02168.1 10029 g83115 i0 59.4 0.334494773519164 32 13 33.4 0 139 234 5 36 EGW02168.1 hypothetical protein I79_004819 [Cricetulus griseus] diamond 96 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
27026302 27026302 PRJNA983838_P_NODE_113122_length_246_cov_1.277457_g110755_i0 PRJNA983838 113122 246 1.277457 3.14254422 Pteropus alecto 9402 Chordata Chordata 43.5 0.0186   NR ELK00298.1 9402 g110755 i0 76 0.304878048780488 25 6 30.5 0 49 123 83 107 ELK00298.1 hypothetical protein PAL_GLEAN10025425 [Pteropus alecto] diamond 75 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
27437435 27437435 PRJNA983838_P_NODE_96443_length_266_cov_1.295337_g94076_i0 PRJNA983838 96443 266 1.295337 3.44559642 Capra hircus 9925 Chordata Chordata 42 0.0177   NR XDB63820.1 9925 g94076 i0 37.9 0.654135338345865 58 24 65.4 1 193 20 15 60 XDB63820.1 hypothetical protein ABFV05_017436 [Capra hircus] diamond 174 42 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Capra Capra hircus
27443511 27443511 PRJNA983838_P_NODE_47383_length_451_cov_1.314815_g45017_i0 PRJNA983838 47383 451 1.314815 5.92981565 Metazoa 33208 Chordata Chordata 159 5.6299999999999996e-43   NR XP_069077551.1 8319 g45017 i0 70.5 10.4035476718404 112 32 73.8 1 449 117 405 516 XP_069077551.1 succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial [Pleurodeles waltl] diamond 4692 160 0.99375 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27595180 27595180 PRJNA983838_P_NODE_95864_length_267_cov_1.391753_g93497_i0 PRJNA983838 95864 267 1.391753 3.71598051 Bos taurus 9913 Chordata Chordata 173 1.18e-49   NR NP_803461.2 9913 g93497 i0 100 6.92134831460674 88 0 98.9 0 3 266 205 292 NP_803461.2 DNA nucleotidylexotransferase [Bos taurus] diamond 1848 173 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
27696093 27696093 PRJNA983838_P_NODE_102824_length_255_cov_1.714286_g100457_i0 PRJNA983838 102824 255 1.714286 4.3714293 Rodentia 9989 Chordata Chordata 42.7 0.0444   NR XP_017173754.1 10090 g100457 i0 57.1 0.823529411764706 35 15 41.2 0 142 246 670 704 XP_017173754.1 VPS10 domain-containing receptor SorCS1 isoform X3 [Mus musculus] diamond 210 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27784707 27784707 PRJNA983838_P_NODE_108624_length_250_cov_0.864407_g106257_i0 PRJNA983838 108624 250 0.864407 2.1610175 Myodes glareolus 447135 Chordata Chordata 47.8 6.38e-4   NR XP_048305006.1 447135 g106257 i0 72.4 0.348 29 8 34.8 0 113 199 258 286 XP_048305006.1 sperm acrosome membrane-associated protein 6 isoform X3 [Myodes glareolus] diamond 87 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Myodes Myodes glareolus
27784709 27784709 PRJNA983838_P_NODE_79804_length_301_cov_1.026316_g77437_i0 PRJNA983838 79804 301 1.026316 3.08921116 Apodemus speciosus 105296 Chordata Chordata 45.4 0.00834   NR GAB1285582.1 105296 g77437 i0 51.3 1.21594684385382 39 19 38.9 0 150 266 328 366 GAB1285582.1 Protein transport protein Sec16B [Apodemus speciosus] diamond 366 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
28257934 28257934 PRJNA983838_P_NODE_67106_length_341_cov_2.932836_g64739_i0 PRJNA983838 67106 341 2.932836 10.00097076 Mus musculus 10090 Chordata Chordata 48.1 9.01e-5   NR CAB01554.1 10090 g64739 i0 71 0.272727272727273 31 9 27.3 0 193 285 1 31 CAB01554.1 unknown, partial [Mus musculus] diamond 93 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28416094 28416094 PRJNA983838_P_NODE_102786_length_255_cov_1.714286_g100419_i0 PRJNA983838 102786 255 1.714286 4.3714293 Rattus norvegicus 10116 Chordata Chordata 128 7.449999999999999e-37   NR EDL83367.1 10116 g100419 i0 100 0.694117647058824 59 0 69.4 0 179 3 1 59 EDL83367.1 rCG22707 [Rattus norvegicus] diamond 177 128 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
28479148 28479148 PRJNA983838_P_NODE_73226_length_320_cov_1.821862_g70859_i0 PRJNA983838 73226 320 1.821862 5.8299584 Rattus norvegicus 10116 Chordata Chordata 110 1.99e-29   NR EDL85092.1 10116 g70859 i0 100 0.478125 51 0 47.8 0 38 190 1 51 EDL85092.1 rCG40912 [Rattus norvegicus] diamond 153 110 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
28731753 28731753 PRJNA983838_P_NODE_100807_length_258_cov_2.389189_g98440_i0 PRJNA983838 100807 258 2.389189 6.16410762 Galeopterus variegatus 482537 Chordata Chordata 43.9 0.0185   NR XP_008592617.1 482537 g98440 i0 33.3 0.941860465116279 81 52 94.2 1 243 1 1221 1299 XP_008592617.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103610174 [Galeopterus variegatus] diamond 243 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Galeopterus Galeopterus variegatus
28857903 28857903 PRJNA983838_P_NODE_101588_length_257_cov_1.695652_g99221_i0 PRJNA983838 101588 257 1.695652 4.35782564 Mus caroli 10089 Chordata Chordata 44.3 0.00602   NR XP_021010493.1 10089 g99221 i0 65.6 0.373540856031128 32 10 36.2 1 255 163 119 150 XP_021010493.1 protein FAM156A/FAM156B-like isoform X2 [Mus caroli] diamond 96 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
28889516 28889516 PRJNA983838_P_NODE_107488_length_250_cov_2.644068_g105121_i0 PRJNA983838 107488 250 2.644068 6.61017 Cricetulus griseus 10029 Chordata Chordata 49.7 3.99e-5   NR EGV97888.1 10029 g105121 i0 45.2 0.996 42 23 50.4 0 4 129 85 126 EGV97888.1 HERV-K_7p22.1 provirus ancestral Pol protein [Cricetulus griseus] diamond 249 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
29047555 29047555 PRJNA983838_P_NODE_105888_length_252_cov_0.871508_g103521_i0 PRJNA983838 105888 252 0.871508 2.19620016 Neotoma lepida 56216 Chordata Chordata 52.8 8.48e-6   NR OBS81016.1 56216 g103521 i0 69.2 0.464285714285714 39 8 41.7 1 98 202 174 212 OBS81016.1 hypothetical protein A6R68_20789 [Neotoma lepida] diamond 117 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
29047559 29047559 PRJNA983838_P_NODE_118968_length_242_cov_0.923077_g116601_i0 PRJNA983838 118968 242 0.923077 2.23384634 Apodemus speciosus 105296 Chordata Chordata 47 0.00118   NR GAB1288457.1 105296 g116601 i0 56.1 0.508264462809917 41 18 50.8 0 127 5 350 390 GAB1288457.1 Maternal embryonic leucine zipper kinase [Apodemus speciosus] diamond 123 47 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Apodemus Apodemus speciosus
29047564 29047564 PRJNA983838_P_NODE_97168_length_264_cov_3.198953_g94801_i0 PRJNA983838 97168 264 3.198953 8.44523592 Echinops telfairi 9371 Chordata Chordata 67 1.37e-10   NR XP_045151757.1 9371 g94801 i0 90 3.40909090909091 50 5 56.8 0 3 152 552 601 XP_045151757.1 centrosome and spindle pole-associated protein 1 isoform X7 [Echinops telfairi] diamond 900 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
30279472 30279472 PRJNA983838_P_NODE_100452_length_259_cov_1.618280_g98085_i0 PRJNA983838 100452 259 1.61828 4.1913452 Monodelphis domestica 13616 Chordata Chordata 44.3 0.0125   NR XP_056676165.1 13616 g98085 i0 50 0.903474903474903 48 19 49.8 2 68 196 23 70 XP_056676165.1 translation initiation factor IF-2-like [Monodelphis domestica] diamond 234 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Didelphimorphia Didelphidae Monodelphis Monodelphis domestica
30531784 30531784 PRJNA983838_P_NODE_106993_length_251_cov_0.876404_g104626_i0 PRJNA983838 106993 251 0.876404 2.19977404 Cricetulus griseus 10029 Chordata Chordata 44.3 8.7e-4   NR EGW08013.1 10029 g104626 i0 66.7 0.860557768924303 30 10 35.9 0 236 147 5 34 EGW08013.1 hypothetical protein I79_019970 [Cricetulus griseus] diamond 216 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
30721320 30721320 PRJNA983838_P_NODE_77474_length_307_cov_1.837607_g75107_i0 PRJNA983838 77474 307 1.837607 5.64145349 Lamprotornis superbus 245042 Chordata Chordata 45.1 0.0113   NR KAI1229910.1 245042 g75107 i0 56 3.38110749185668 50 22 48.9 0 150 1 3 52 KAI1229910.1 hypothetical protein IHE44_0010615 [Lamprotornis superbus] diamond 1038 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sturnidae Lamprotornis Lamprotornis superbus
30911153 30911153 PRJNA983838_P_NODE_110374_length_248_cov_1.600000_g108007_i0 PRJNA983838 110374 248 1.6 3.968 Rattus norvegicus 10116 Chordata Chordata 139 8.46e-41   NR EDL89811.1 10116 g108007 i0 100 0.689516129032258 57 0 69 0 171 1 1 57 EDL89811.1 dehydrogenase/reductase (SDR family) X chromosome (predicted), isoform CRA_d [Rattus norvegicus] diamond 171 139 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
30942770 30942770 PRJNA983838_P_NODE_93554_length_271_cov_1.575758_g91187_i0 PRJNA983838 93554 271 1.575758 4.27030418 Ophiophagus hannah 8665 Chordata Chordata 49.3 2.49e-4   NR ETE63456.1 8665 g91187 i0 55.6 0.819188191881919 36 16 39.9 0 271 164 140 175 ETE63456.1 Protein sel-1-like 2, partial [Ophiophagus hannah] diamond 222 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah
31385284 31385284 PRJNA983838_P_NODE_73196_length_320_cov_1.991903_g70829_i0 PRJNA983838 73196 320 1.991903 6.3740896 Scyliorhinus torazame 75743 Chordata Chordata 80.5 8.18e-16   NR GCB65767.1 75743 g70829 i0 66.1 1.05 56 19 52.5 0 320 153 184 239 GCB65767.1 hypothetical protein [Scyliorhinus torazame] diamond 336 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Carcharhiniformes Scyliorhinidae Scyliorhinus Scyliorhinus torazame
31480327 31480327 PRJNA983838_P_NODE_90496_length_277_cov_1.323529_g88129_i0 PRJNA983838 90496 277 1.323529 3.66617533 Oikopleura dioica 34765 Chordata Chordata 85.9 3.86e-17   NR CBY13424.1 34765 g88129 i0 53.1 0.877256317689531 81 36 87.7 2 2 244 452 530 CBY13424.1 unnamed protein product [Oikopleura dioica] diamond 243 85.9 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
31612566 31612566 PRJNA983838_P_NODE_55236_length_397_cov_2.216049_g52869_i0 PRJNA983838 55236 397 2.216049 8.79771453 Lepidosauria 8504 Chordata Chordata 113 3.93e-26   NR XP_006017841.1 38654 g52869 i0 58.8 1.26952141057935 85 35 64.2 0 283 29 27 111 XP_006017841.1 thioredoxin reductase 3 [Alligator sinensis] diamond 504 113 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator sinensis
32397617 32397617 PRJNA983838_P_NODE_104419_length_253_cov_0.866667_g102052_i0 PRJNA983838 104419 253 0.866667 2.19266751 Rattus norvegicus 10116 Chordata Chordata 40.8 0.0229   NR EDL79243.1 10116 g102052 i0 55.6 0.320158102766798 27 12 32 0 56 136 28 54 EDL79243.1 rCG26762 [Rattus norvegicus] diamond 81 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
32467043 32467043 PRJNA983838_P_NODE_88299_length_281_cov_1.841346_g85932_i0 PRJNA983838 88299 281 1.841346 5.17418226 Metazoa 33208 Chordata Chordata 44.3 0.0168   NR KAI8511762.1 7741 g85932 i0 32.2 1.56939501779359 90 53 92.9 3 275 15 353 437 KAI8511762.1 DCC-interacting protein 13-alpha [Branchiostoma belcheri] diamond 441 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
32870583 32870583 PRJNA983838_P_NODE_52720_length_412_cov_2.820059_g50353_i0 PRJNA983838 52720 412 2.820059 11.61864308 Cricetulus griseus 10029 Chordata Chordata 42.7 0.0161   NR EGW03845.1 10029 g50353 i0 63.2 0.276699029126214 38 13 27.7 1 157 44 10 46 EGW03845.1 hypothetical protein I79_017361 [Cricetulus griseus] diamond 114 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;