RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA982720" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA982720 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26677851 26677851 PRJNA982720_S_NODE_10621_length_212_cov_4.223022_g10593_i0 PRJNA982720 10621 212 4.223022 8.95280664 Engystomops pustulosus 76066 Chordata Chordata 47.4 5.05e-5   NR KAG8588135.1 76066 g10593 i0 54.3 0.495283018867925 35 16 49.5 0 35 139 35 69 KAG8588135.1 hypothetical protein GDO81_005883 [Engystomops pustulosus] diamond 105 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
28447700 28447700 PRJNA982720_S_NODE_2866_length_348_cov_5.447273_g2838_i0 PRJNA982720 2866 348 5.447273 18.95651004 Myotis myotis 51298 Chordata Chordata 57 1.85e-7   NR KAF6303955.1 51298 g2838 i0 61.2 0.422413793103448 49 16 39.7 1 233 96 80 128 KAF6303955.1 hypothetical protein mMyoMyo1_008938 [Myotis myotis] diamond 147 57 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis myotis
28573741 28573741 PRJNA982720_S_NODE_10027_length_236_cov_2.748466_g9999_i0 PRJNA982720 10027 236 2.748466 6.48637976 Zalophus californianus 9704 Chordata Chordata 48.9 1.22e-4   NR XP_027467811.1 9704 g9999 i0 76.7 0.38135593220339 30 7 38.1 0 132 43 25 54 XP_027467811.1 actin-related protein 2/3 complex subunit 5 isoform X1 [Zalophus californianus] diamond 90 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Otariidae Zalophus Zalophus californianus
29552396 29552396 PRJNA982720_S_NODE_7730_length_263_cov_2.157895_g7702_i0 PRJNA982720 7730 263 2.157895 5.67526385 Mastomys coucha 35658 Chordata Chordata 48.5 3.85e-4   NR XP_031196951.1 35658 g7702 i0 46.7 0.901140684410646 45 23 50.2 1 96 227 67 111 XP_031196951.1 thymidine kinase 2, mitochondrial isoform X1 [Mastomys coucha] diamond 237 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mastomys Mastomys coucha
29811076 29811076 PRJNA982720_S_NODE_8791_length_251_cov_0.865169_g8763_i0 PRJNA982720 8791 251 0.865169 2.17157419 Mammalia 40674 Chordata Chordata 46.6 0.0015   NR KAF0871557.1 9678 g8763 i0 44.3 5.83266932270916 61 30 68.1 2 250 80 37 97 KAF0871557.1 LORF2 protein, partial [Crocuta crocuta] diamond 1464 47 0.991489361702128 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Hyaenidae Crocuta Crocuta crocuta
32492589 32492589 PRJNA982720_S_NODE_1399_length_404_cov_1.441088_g1371_i0 PRJNA982720 1399 404 1.441088 5.82199552 Rhinolophus ferrumequinum 59479 Chordata Chordata 65.9 1.47e-9   NR KAF6390339.1 59479 g1371 i0 53.7 1.89356435643564 67 31 49.8 0 338 138 276 342 KAF6390339.1 hypothetical protein mRhiFer1_007909 [Rhinolophus ferrumequinum] diamond 765 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Rhinolophidae Rhinolophus Rhinolophus ferrumequinum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;