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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA982106" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 14 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA982106 · 14 ✖

analysis 1

  • diamond · 14 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2239082 2239082 PRJNA982106_P_NODE_20162_length_252_cov_1.229050_g19922_i0 PRJNA982106 20162 252 1.22905 3.097206 Grus japonensis 30415 Chordata Chordata 156 1.08e-43   NR GAB0207453.1 30415 g19922 i0 84.3 11.8571428571429 83 13 98.8 0 2 250 159 241 GAB0207453.1 pol-like protein ENS-3 [Grus japonensis] diamond 2988 156 1 Eukaryota Opisthokonta Metazoa Chordata Aves Gruiformes Gruidae Grus Grus japonensis
18815768 18815768 PRJNA982106_P_NODE_33055_length_231_cov_2.474684_g32815_i0 PRJNA982106 33055 231 2.474684 5.71652004 Chordata 7711 Chordata Chordata 106 5.2600000000000005e-27   NR KAK9411593.1 8729 g32815 i0 61.7 36.8181818181818 81 22 93.5 1 16 231 82 162 KAK9411593.1 40S ribosomal protein S12 [Crotalus adamanteus] diamond 8505 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
26836592 26836592 PRJNA982106_P_NODE_20981_length_251_cov_0.865169_g20741_i0 PRJNA982106 20981 251 0.865169 2.17157419 Anas platyrhynchos 8839 Chordata Chordata 52.8 1.17e-5   NR EOB05496.1 8839 g20741 i0 71.8 0.466135458167331 39 11 46.6 0 6 122 15 53 EOB05496.1 Placenta growth factor [Anas platyrhynchos] diamond 117 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Anas Anas platyrhynchos
27000486 27000486 PRJNA982106_P_NODE_3102_length_498_cov_1.327059_g2863_i0 PRJNA982106 3102 498 1.327059 6.60875382 Chordata 7711 Chordata Chordata 241 4.71e-77   NR XP_027263554.2 10029 g2863 i0 79.5 14.8433734939759 156 29 94 1 494 27 128 280 XP_027263554.2 40S ribosomal protein S3 isoform X2 [Cricetulus griseus] diamond 7392 243 0.991769547325103 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
27311035 27311035 PRJNA982106_P_NODE_17463_length_268_cov_63.030769_g17223_i0 PRJNA982106 17463 268 63.030769 168.92246092 Chroicocephalus ridibundus 1192867 Chordata Chordata 48.1 5.32e-4   NR XP_063212287.1 1192867 g17223 i0 78.6 0.313432835820896 28 6 31.3 0 118 201 217 244 XP_063212287.1 uncharacterized protein LOC134525383 [Chroicocephalus ridibundus] diamond 84 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Laridae Chroicocephalus Chroicocephalus ridibundus
28510694 28510694 PRJNA982106_P_NODE_1927_length_631_cov_0.876344_g1693_i0 PRJNA982106 1927 631 0.876344 5.52973064 Accipiter gentilis 8957 Chordata Chordata 255 2.92e-77   NR XP_049649411.1 8957 g1693 i0 58.3 1.06022187004754 223 80 99.8 2 1 630 2 224 XP_049649411.1 uncharacterized protein LOC126035221 [Accipiter gentilis] diamond 669 255 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Astur Astur gentilis
29779627 29779627 PRJNA982106_P_NODE_4831_length_416_cov_3.938776_g4592_i0 PRJNA982106 4831 416 3.938776 16.38530816 Metazoa 33208 Chordata Chordata 200 7.070000000000001e-59   NR ANH55795.1 8450 g4592 i0 95.4 640.550480769231 109 5 78.6 0 89 415 127 235 ANH55795.1 cytochrome c oxidase subunit I [Hypogeophis rostratus] diamond 266469 202 0.99009900990099 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Indotyphlidae Hypogeophis Hypogeophis rostratus
29805135 29805135 PRJNA982106_P_NODE_15171_length_284_cov_0.886256_g14931_i0 PRJNA982106 15171 284 0.886256 2.51696704 Tachyglossus aculeatus 9261 Chordata Chordata 60.8 5.34e-9   NR XP_038627340.1 9261 g14931 i0 63.8 25.3204225352113 47 17 49.6 0 283 143 124 170 XP_038627340.1 ferredoxin-2, mitochondrial [Tachyglossus aculeatus] diamond 7191 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Tachyglossidae Tachyglossus Tachyglossus aculeatus
30658242 30658242 PRJNA982106_P_NODE_3793_length_456_cov_3.874674_g3554_i0 PRJNA982106 3793 456 3.874674 17.66851344 Staurois parvus 386267 Chordata Chordata 58.5 8.77e-8   NR CAI9533415.1 386267 g3554 i0 40 2.22368421052632 110 47 59.9 4 391 119 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1014 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31069181 31069181 PRJNA982106_P_NODE_17635_length_268_cov_0.861538_g17395_i0 PRJNA982106 17635 268 0.861538 2.30892184 Calidris pugnax 198806 Chordata Chordata 76.6 5.88e-14   NR XP_014807396.1 198806 g17395 i0 59.7 0.694029850746269 62 25 69.4 0 188 3 845 906 XP_014807396.1 PREDICTED: uncharacterized protein LOC106893722 [Calidris pugnax] diamond 186 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Scolopacidae Calidris Calidris pugnax
31226840 31226840 PRJNA982106_P_NODE_10555_length_321_cov_1.229839_g10315_i0 PRJNA982106 10555 321 1.229839 3.94778319 Engystomops pustulosus 76066 Chordata Chordata 47.4 2.21e-4   NR KAG8536220.1 76066 g10315 i0 67.9 0.785046728971963 28 9 26.2 0 85 2 43 70 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 252 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31480307 31480307 PRJNA982106_P_NODE_20436_length_251_cov_0.865169_g20196_i0 PRJNA982106 20436 251 0.865169 2.17157419 Calidris pugnax 198806 Chordata Chordata 79.7 3.98e-15   NR XP_014807396.1 198806 g20196 i0 71.9 2.04382470119522 57 16 68.1 0 3 173 79 135 XP_014807396.1 PREDICTED: uncharacterized protein LOC106893722 [Calidris pugnax] diamond 513 79.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Scolopacidae Calidris Calidris pugnax
31764671 31764671 PRJNA982106_P_NODE_8717_length_341_cov_2.018657_g8477_i0 PRJNA982106 8717 341 2.018657 6.88362037 Erpetoichthys calabaricus 27687 Chordata Chordata 75.9 1.65e-13   NR XP_051791274.1 27687 g8477 i0 74.5 2.24340175953079 51 12 44 1 232 83 156 206 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 765 75.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
32781929 32781929 PRJNA982106_P_NODE_30220_length_243_cov_0.905882_g29980_i0 PRJNA982106 30220 243 0.905882 2.20129326 Chordata 7711 Chordata Chordata 42 0.0328   NR ETE69610.1 8665 g29980 i0 100 2.96296296296296 20 0 24.7 0 2 61 122 141 ETE69610.1 Tumor susceptibility protein, partial [Ophiophagus hannah] diamond 720 42 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Ophiophagus Ophiophagus hannah

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;