RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA982106" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA982106 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27822266 27822266 PRJNA982106_P_NODE_22984_length_249_cov_0.875000_g22744_i0 PRJNA982106 22984 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 142 3.499999999999999e-38   NR WP_048165412.1 971279 g22744 i0 75.9 39.0602409638554 83 20 100 0 1 249 161 243 WP_048165412.1 cyclic 2,3-diphosphoglycerate synthase [Palaeococcus pacificus] diamond 9726 143 0.993006993006993 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Palaeococcus Palaeococcus pacificus
29047551 29047551 PRJNA982106_P_NODE_9108_length_337_cov_1.079545_g8868_i0 PRJNA982106 9108 337 1.079545 3.63806665 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 210 1.51e-61   NR MBC7109221.1 1906667 g8868 i0 95.5 0.997032640949555 112 5 99.7 0 336 1 26 137 MBC7109221.1 bifunctional DNA primase/polymerase [Methanomassiliicoccales archaeon] diamond 336 210 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
30721292 30721292 PRJNA982106_P_NODE_16794_length_273_cov_1.070000_g16554_i0 PRJNA982106 16794 273 1.07 2.9211 Thermoplasmata archaeon 1906666 Archaea Archaea 42.7 0.0497   NR HEV2429800.1 1906666 g16554 i0 45.9 0.406593406593407 37 20 40.7 0 263 153 43 79 HEV2429800.1 DNA methyltransferase [Thermoplasmata archaeon] diamond 111 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31543356 31543356 PRJNA982106_P_NODE_23176_length_249_cov_0.875000_g22936_i0 PRJNA982106 23176 249 0.875 2.17875 Methanothrix soehngenii 2223 Archaea Archaea 71.2 4.89e-13   NR WP_334140542.1 2223 g22936 i0 45 2.90361445783133 80 41 92.8 2 231 1 2 81 WP_334140542.1 bifunctional DNA primase/polymerase, partial [Methanothrix soehngenii] diamond 723 71.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;