RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA982106" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 7 ✖

bioproject 1

  • PRJNA982106 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11167161 11167161 PRJNA982106_P_NODE_20949_length_251_cov_0.865169_g20709_i0 PRJNA982106 20949 251 0.865169 2.17157419 Sebaldella sp. 2819260 Bacteria Bacteria 169 7.66e-51   NR MBP9479586.1 2819260 g20709 i0 100 0.99203187250996006 83 0 99.2 0 251 3 88 170 MBP9479586.1 transglycosylase domain-containing protein [Sebaldella sp.] diamond 249 169 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Sebaldella Sebaldella sp.
21366003 21366003 PRJNA982106_P_NODE_28657_length_244_cov_0.900585_g28417_i0 PRJNA982106 28657 244 0.900585 2.1974274 Fusobacterium sp. 68766 Bacteria Bacteria 174 2.0899999999999994e-52   NR MFR9019722.1 68766 g28417 i0 100 0.995901639344262 81 0 99.6 0 244 2 119 199 MFR9019722.1 anaerobic ribonucleoside-triphosphate reductase [Fusobacterium sp.] diamond 243 174 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
22640999 22640999 PRJNA982106_P_NODE_27338_length_245_cov_0.895349_g27098_i0 PRJNA982106 27338 245 0.895349 2.19360505 Fusobacterium sp. 68766 Bacteria Bacteria 157 2.5899999999999998e-42   NR MBS5037509.1 68766 g27098 i0 100 1.98367346938776 81 0 99.2 0 2 244 722 802 MBS5037509.1 transcription-repair coupling factor [Fusobacterium sp.] diamond 486 157 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
22948831 22948831 PRJNA982106_P_NODE_24658_length_248_cov_0.880000_g24418_i0 PRJNA982106 24658 248 0.88 2.1824 Fusobacterium sp. 68766 Bacteria Bacteria 110 5.8e-27   NR MDO4588281.1 68766 g24418 i0 65.9 3.90725806451613 82 28 99.2 0 248 3 178 259 MDO4588281.1 carbohydrate kinase [Fusobacterium sp.] diamond 969 110 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
27531881 27531881 PRJNA982106_P_NODE_27003_length_246_cov_0.890173_g26763_i0 PRJNA982106 27003 246 0.890173 2.18982558 Fusobacterium sp. 68766 Bacteria Bacteria 43.9 0.0134   NR MBS5038587.1 68766 g26763 i0 100 0.231707317073171 19 0 23.2 0 188 244 1 19 MBS5038587.1 uridine phosphorylase [Fusobacterium sp.] diamond 57 43.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
32460858 32460858 PRJNA982106_P_NODE_20819_length_251_cov_0.865169_g20579_i0 PRJNA982106 20819 251 0.865169 2.17157419 Fusobacterium sp. 68766 Bacteria Bacteria 148 2.1200000000000001e-44   NR MFR9020277.1 68766 g20579 i0 91.6 0.99203187250996006 83 7 99.2 0 251 3 17 99 MFR9020277.1 hypothetical protein [Fusobacterium sp.] diamond 249 148 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
32776040 32776040 PRJNA982106_P_NODE_27380_length_245_cov_0.895349_g27140_i0 PRJNA982106 27380 245 0.895349 2.19360505 Fusobacterium perfoetens 852 Bacteria Bacteria 161 7.39e-46   NR WP_235247314.1 852 g27140 i0 97.5 0.991836734693878 81 2 99.2 0 1 243 169 249 WP_235247314.1 ATP-binding protein [Fusobacterium perfoetens] diamond 243 161 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium perfoetens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;