RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA982106" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA982106 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28163452 28163452 PRJNA982106_P_NODE_18985_length_259_cov_1.655914_g18745_i0 PRJNA982106 18985 259 1.655914 4.28881726 Prymnesium parvum 97485 Haptophyta other_Eukaryota 170 1.74e-49   NR KAL1493488.1 97485 g18745 i0 87.2 0.996138996138996 86 11 99.6 0 1 258 115 200 KAL1493488.1 hypothetical protein AB1Y20_017193 [Prymnesium parvum] diamond 258 170 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
30500278 30500278 PRJNA982106_P_NODE_15993_length_278_cov_1.160976_g15753_i0 PRJNA982106 15993 278 1.160976 3.22751328 Diacronema lutheri 2081491 Haptophyta other_Eukaryota 144 8.38e-38   NR KAG8462845.1 2081491 g15753 i0 69.6 1.93165467625899 92 28 99.3 0 278 3 30 121 KAG8462845.1 hypothetical protein KFE25_001618 [Diacronema lutheri] diamond 537 144 1 Eukaryota Haptista   Haptophyta Pavlovophyceae Pavlovales Pavlovaceae Diacronema Diacronema lutheri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;