RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA981359" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA981359 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30658215 30658215 PRJNA981359_S_NODE_52493_length_275_cov_5.767327_g52393_i0 PRJNA981359 52493 275 5.767327 15.86014925 Fragilariopsis cylindrus CCMP11 186039 SAR_Eukaryotes SAR_Eukaryotes 44.7 0.00703   NR OEU08163.1 635003 g52393 i0 48.7 0.425454545454545 39 20 42.5 0 104 220 68 106 OEU08163.1 hypothetical protein FRACYDRAFT_250392 [Fragilariopsis cylindrus CCMP1102] diamond 117 44.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Fragilariopsis Fragilariopsis cylindrus
30879321 30879321 PRJNA981359_S_NODE_11494_length_406_cov_34.321321_g11394_i0 PRJNA981359 11494 406 34.321321 139.34456326 Chrysophaeum taylorii 2483200 SAR_Eukaryotes SAR_Eukaryotes 69.3 1.05e-10   NR KAJ8601885.1 2483200 g11394 i0 64.3 0.820197044334975 56 20 41.4 0 338 171 419 474 KAJ8601885.1 hypothetical protein CTAYLR_002641 [Chrysophaeum taylorii] diamond 333 69.3 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Chrysophaeum Chrysophaeum taylorii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;