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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA980839" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980839 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20085511 20085511 PRJNA980839_P_NODE_230956_length_243_cov_0.905882_g227172_i0 PRJNA980839 230956 243 0.905882 2.20129326 Cuculus canorus 55661 Chordata Chordata 57.8 1.91e-7   NR XP_053914590.1 55661 g227172 i0 79.4 0.839506172839506 34 7 42 0 242 141 27 60 XP_053914590.1 microtubule-associated protein 4 isoform X6 [Cuculus canorus] diamond 204 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Cuculiformes Cuculidae Cuculus Cuculus canorus
26646126 26646126 PRJNA980839_P_NODE_159501_length_279_cov_1.233010_g155717_i0 PRJNA980839 159501 279 1.23301 3.4400979 Dasypus novemcinctus 9361 Chordata Chordata 46.6 0.00249   NR XP_071063862.1 9361 g155717 i0 39.5 0.817204301075269 76 41 81.7 1 36 263 277 347 XP_071063862.1 nuclear valosin-containing protein-like isoform X12 [Dasypus novemcinctus] diamond 228 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
26740973 26740973 PRJNA980839_P_NODE_233541_length_242_cov_0.911243_g229757_i0 PRJNA980839 233541 242 0.911243 2.20520806 Manis javanica 9974 Chordata Chordata 60.8 1.41e-8   NR KAI5941845.1 9974 g229757 i0 43.8 1.88429752066116 89 34 90.5 2 225 7 89 177 KAI5941845.1 LINE-1 retrotransposable element ORF2 protein [Manis javanica] diamond 456 60.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
27152201 27152201 PRJNA980839_P_NODE_110622_length_340_cov_2.438202_g106838_i0 PRJNA980839 110622 340 2.438202 8.2898868 Erpetoichthys calabaricus 27687 Chordata Chordata 66.6 3.67e-10   NR XP_051791274.1 27687 g106838 i0 71.4 2.59411764705882 49 13 42.4 1 225 82 156 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 882 67 0.994029850746269 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27247516 27247516 PRJNA980839_P_NODE_240163_length_240_cov_2.305389_g236379_i0 PRJNA980839 240163 240 2.305389 5.5329336 Diceros bicornis minor 77932 Chordata Chordata 45.4 0.00408   NR KAF5915360.1 77932 g236379 i0 58.5 0.5125 41 17 51.3 0 240 118 539 579 KAF5915360.1 hypothetical protein HPG69_012113 [Diceros bicornis minor] diamond 123 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Perissodactyla Rhinocerotidae Diceros Diceros bicornis
27279221 27279221 PRJNA980839_P_NODE_222043_length_245_cov_0.895349_g218259_i0 PRJNA980839 222043 245 0.895349 2.19360505 Chelonoidis abingdonii 106734 Chordata Chordata 43.5 0.0201   NR XP_032650166.1 106734 g218259 i0 37.3 1.28571428571429 67 27 63.7 3 207 52 12 78 XP_032650166.1 LOW QUALITY PROTEIN: serine incorporator 4 [Chelonoidis abingdonii] diamond 315 43.5 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Testudinidae Chelonoidis Chelonoidis abingdonii
27310976 27310976 PRJNA980839_P_NODE_192423_length_254_cov_1.441989_g188639_i0 PRJNA980839 192423 254 1.441989 3.66265206 Halichoerus grypus 9711 Chordata Chordata 49.3 1.72e-4   NR XP_035965844.1 9711 g188639 i0 53.2 0.55511811023622 47 22 55.5 0 192 52 205 251 XP_035965844.1 pyridoxal phosphate homeostasis protein isoform X2 [Halichoerus grypus] diamond 141 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Phocidae Halichoerus Halichoerus grypus
27563131 27563131 PRJNA980839_P_NODE_247964_length_197_cov_4.032258_g244180_i0 PRJNA980839 247964 197 4.032258 7.94354826 Dasypus novemcinctus 9361 Chordata Chordata 70.1 4.02e-12   NR XP_058158348.1 9361 g244180 i0 82.9 0.624365482233503 41 7 62.4 0 1 123 44 84 XP_058158348.1 pre-B-cell leukemia transcription factor 3 isoform X4 [Dasypus novemcinctus] diamond 123 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus
27916613 27916613 PRJNA980839_P_NODE_188825_length_256_cov_2.295082_g185041_i0 PRJNA980839 188825 256 2.295082 5.87540992 root 1 Root_unresolved Root_unresolved 170 7.789999999999999e-47   NR XP_044906331.1 9685 g185041 i0 95.2 11.8125 84 4 98.4 0 3 254 1206 1289 XP_044906331.1 LOW QUALITY PROTEIN: uncharacterized protein LOC123383283 [Felis catus] diamond 3024 170 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Felis Felis catus
28005639 28005639 PRJNA980839_P_NODE_187165_length_257_cov_3.929348_g183381_i0 PRJNA980839 187165 257 3.929348 10.09842436 Rousettus aegyptiacus 9407 Chordata Chordata 67.4 3.67e-11   NR KAF6467758.1 9407 g183381 i0 100 7.13229571984436 36 0 42 0 257 150 210 245 KAF6467758.1 signal-induced proliferation-associated 1 [Rousettus aegyptiacus] diamond 1833 67.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
28194684 28194684 PRJNA980839_P_NODE_206186_length_249_cov_0.875000_g202402_i0 PRJNA980839 206186 249 0.875 2.17875 Gopherus flavomarginatus 286002 Chordata Chordata 43.9 0.0147   NR XP_050804276.1 286002 g202402 i0 44.3 0.843373493975904 70 34 81.9 3 238 35 119 185 XP_050804276.1 putative SCAN domain-containing protein SCAND2P [Gopherus flavomarginatus] diamond 210 43.9 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Testudinidae Gopherus Gopherus flavomarginatus
28447610 28447610 PRJNA980839_P_NODE_130226_length_310_cov_1.071730_g126442_i0 PRJNA980839 130226 310 1.07173 3.322363 Sitta europaea 50251 Chordata Chordata 46.6 0.0022   NR CAM5941599.1 50251 g126442 i0 43.3 0.580645161290323 60 29 53.2 1 168 4 70 129 CAM5941599.1 unnamed protein product [Sitta europaea] diamond 180 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
28668624 28668624 PRJNA980839_P_NODE_214327_length_247_cov_0.885057_g210543_i0 PRJNA980839 214327 247 0.885057 2.18609079 Choloepus didactylus 27675 Chordata Chordata 45.4 0.0043   NR XP_037687967.1 27675 g210543 i0 42.7 1.82186234817814 75 41 88.7 1 237 19 337 411 XP_037687967.1 ataxin-3 isoform X2 [Choloepus didactylus] diamond 450 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
28700216 28700216 PRJNA980839_P_NODE_229387_length_243_cov_0.905882_g225603_i0 PRJNA980839 229387 243 0.905882 2.20129326 Chelydra serpentina 8475 Chordata Chordata 119 3.56e-32   NR KAG6940528.1 8475 g225603 i0 81.7 4.30864197530864 82 10 95.1 2 11 241 17 98 KAG6940528.1 ribosomal protein S20, partial [Chelydra serpentina] diamond 1047 119 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Chelydridae Chelydra Chelydra serpentina
28952896 28952896 PRJNA980839_P_NODE_194428_length_252_cov_5.586592_g190644_i0 PRJNA980839 194428 252 5.586592 14.07821184 Mus musculus 10090 Chordata Chordata 173 6.11e-48   NR NP_034359.2 10090 g190644 i0 90.5 6 84 8 100 0 252 1 346 429 NP_034359.2 receptor-type tyrosine-protein kinase FLT3 precursor [Mus musculus] diamond 1512 173 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29836654 29836654 PRJNA980839_P_NODE_174151_length_267_cov_1.587629_g170367_i0 PRJNA980839 174151 267 1.587629 4.23896943 Bos mutus 72004 Chordata Chordata 70.9 5.69e-12   NR MXQ97499.1 72004 g170367 i0 97.3 0.415730337078652 37 1 41.6 0 1 111 356 392 MXQ97499.1 hypothetical protein [Bos mutus] diamond 111 70.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos mutus
30152386 30152386 PRJNA980839_P_NODE_212992_length_247_cov_1.080460_g209208_i0 PRJNA980839 212992 247 1.08046 2.6687362 Phyllostomus discolor 89673 Chordata Chordata 55.1 2.36e-7   NR KAF6125536.1 89673 g209208 i0 56.6 0.995951417004049 53 21 63.2 2 91 246 29 80 KAF6125536.1 hypothetical protein HJG60_009953 [Phyllostomus discolor] diamond 246 55.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Phyllostomus Phyllostomus discolor
30784568 30784568 PRJNA980839_P_NODE_199014_length_251_cov_0.865169_g195230_i0 PRJNA980839 199014 251 0.865169 2.17157419 Phrynosoma platyrhinos 52577 Chordata Chordata 76.6 4.79e-14   NR KAH0627750.1 52577 g195230 i0 50 1.14741035856574 96 18 99.2 2 251 3 114 192 KAH0627750.1 hypothetical protein JD844_008036 [Phrynosoma platyrhinos] diamond 288 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Phrynosoma Phrynosoma platyrhinos
30784576 30784576 PRJNA980839_P_NODE_222274_length_245_cov_0.895349_g218490_i0 PRJNA980839 222274 245 0.895349 2.19360505 Myxine glutinosa 7769 Chordata Chordata 73.9 4e-13   NR XP_067970771.1 7769 g218490 i0 76.7 0.52653061224489806 43 10 52.7 0 116 244 558 600 XP_067970771.1 voltage-dependent L-type calcium channel subunit alpha-1D-like [Myxine glutinosa] diamond 129 73.9 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
31258547 31258547 PRJNA980839_P_NODE_199375_length_251_cov_0.865169_g195591_i0 PRJNA980839 199375 251 0.865169 2.17157419 Gulo gulo 48420 Chordata Chordata 43.1 0.00483   NR VCW67287.1 48420 g195591 i0 50 0.645418326693227 54 25 64.5 1 223 62 30 81 VCW67287.1 unnamed protein product, partial [Gulo gulo] diamond 162 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Gulo Gulo gulo
31327796 31327796 PRJNA980839_P_NODE_116375_length_330_cov_2.287938_g112591_i0 PRJNA980839 116375 330 2.287938 7.5501954 Mammalia 40674 Chordata Chordata 155 2.11e-41   NR XP_053763641.1 9691 g112591 i0 84.7 23.1818181818182 85 13 77.3 0 75 329 35 119 XP_053763641.1 LOW QUALITY PROTEIN: uncharacterized protein LOC109261140 [Panthera pardus] diamond 7650 156 0.993589743589744 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Panthera Panthera pardus
31454493 31454493 PRJNA980839_P_NODE_237176_length_241_cov_1.136905_g233392_i0 PRJNA980839 237176 241 1.136905 2.73994105 Chordata 7711 Chordata Chordata 151 3.64e-44   NR EMP40612.1 8469 g233392 i0 100 43.1701244813278 77 0 95.9 0 10 240 36 112 EMP40612.1 40S ribosomal protein S9 [Chelonia mydas] diamond 10404 151 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Chelonia Chelonia mydas
31802118 31802118 PRJNA980839_P_NODE_114397_length_334_cov_1.180077_g110613_i0 PRJNA980839 114397 334 1.180077 3.94145718 Chordata 7711 Chordata Chordata 149 2.76e-39   NR XP_009857963.1 7719 g110613 i0 98.6 91.1407185628743 70 1 62.9 0 332 123 587 656 XP_009857963.1 zinc finger protein isoform X1 [Ciona intestinalis] diamond 30441 150 0.993333333333333 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
32144268 32144268 PRJNA980839_P_NODE_138418_length_299_cov_1.703540_g134634_i0 PRJNA980839 138418 299 1.70354 5.0935846 Staurois parvus 386267 Chordata Chordata 57 8.42e-8   NR CAI9580232.1 386267 g134634 i0 46.8 1.60535117056856 79 35 72.2 2 39 254 45 123 CAI9580232.1 unnamed protein product, partial [Staurois parvus] diamond 480 57 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32176139 32176139 PRJNA980839_P_NODE_202718_length_250_cov_0.870056_g198934_i0 PRJNA980839 202718 250 0.870056 2.17514 Myotis brandtii 109478 Chordata Chordata 72.8 1.03e-12   NR EPQ02066.1 109478 g198934 i0 75 1.296 40 10 48 0 129 248 104 143 EPQ02066.1 Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform [Myotis brandtii] diamond 324 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Vespertilionidae Myotis Myotis brandtii
32176156 32176156 PRJNA980839_P_NODE_243458_length_232_cov_88.547170_g239674_i0 PRJNA980839 243458 232 88.54717 205.4294344 Pteropus alecto 9402 Chordata Chordata 67 8.5e-11   NR ELK09034.1 9402 g239674 i0 57.4 0.788793103448276 61 22 73.7 1 3 173 343 403 ELK09034.1 hypothetical protein PAL_GLEAN10008241 [Pteropus alecto] diamond 183 67 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Pteropus Pteropus alecto
32239466 32239466 PRJNA980839_P_NODE_214078_length_247_cov_0.885057_g210294_i0 PRJNA980839 214078 247 0.885057 2.18609079 Cervus elaphus hippelaphus 46360 Chordata Chordata 70.5 5.85e-12   NR OWK00616.1 46360 g210294 i0 96.9 18.668016194332 32 1 38.9 0 148 53 352 383 OWK00616.1 hypothetical protein Celaphus_00016847 [Cervus elaphus hippelaphus] diamond 4611 71.2 0.990168539325843 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
32365991 32365991 PRJNA980839_P_NODE_47539_length_632_cov_9.314848_g43819_i0 PRJNA980839 47539 632 9.314848 58.86983936 Sagmatias obliquidens 3371155 Chordata Chordata 76.3 3.91e-12   NR XP_026943587.1 3371155 g43819 i0 62.5 0.379746835443038 80 26 36.6 2 580 350 629 707 XP_026943587.1 lysine-specific demethylase 4D-like [Sagmatias obliquidens] diamond 240 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Sagmatias Sagmatias obliquidens
32397548 32397548 PRJNA980839_P_NODE_185319_length_259_cov_1.344086_g181535_i0 PRJNA980839 185319 259 1.344086 3.48118274 Bambusicola thoracicus 9083 Chordata Chordata 45.1 0.00111   NR POI33233.1 9083 g181535 i0 100 0.208494208494208 18 0 20.8 0 257 204 2 19 POI33233.1 hypothetical protein CIB84_003015 [Bambusicola thoracicus] diamond 54 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Bambusicola Bambusicola thoracicus
32492505 32492505 PRJNA980839_P_NODE_149139_length_288_cov_1.232558_g145355_i0 PRJNA980839 149139 288 1.232558 3.54976704 Callorhinchus milii 7868 Chordata Chordata 187 1.0699999999999999e-53   NR XP_042202422.1 7868 g145355 i0 93.9 4.08333333333333 98 3 99 1 286 2 497 594 XP_042202422.1 uncharacterized protein LOC121852521 [Callorhinchus milii] diamond 1176 187 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Chimaeriformes Callorhinchidae Callorhinchus Callorhinchus milii
32649806 32649806 PRJNA980839_P_NODE_234940_length_242_cov_0.911243_g231156_i0 PRJNA980839 234940 242 0.911243 2.20520806 Camelus dromedarius 9838 Chordata Chordata 47.8 6.12e-4   NR KAB1254054.1 9838 g231156 i0 56.5 1.41322314049587 46 19 57 1 12 149 23 67 KAB1254054.1 CUE domain-containing protein 2 [Camelus dromedarius] diamond 342 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus dromedarius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;