RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA980587" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA980587 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31574970 31574970 PRJNA980587_P_NODE_80436_length_250_cov_0.870056_g79643_i0 PRJNA980587 80436 250 0.870056 2.17514 Mycoplasma capricolum 2095 Bacteria Bacteria 46.2 1.81e-4   NR WP_271237167.1 2095 g79643 i0 45.6 0.684 57 19 54 1 159 25 1 57 WP_271237167.1 BspA family leucine-rich repeat surface protein [Mycoplasma capricolum] diamond 171 46.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum
31764554 31764554 PRJNA980587_P_NODE_32517_length_419_cov_1.488439_g31724_i0 PRJNA980587 32517 419 1.488439 6.23655941 Anaeroplasma bactoclasticum 2088 Bacteria Bacteria 72.4 2.75e-13   NR WP_119015321.1 2088 g31724 i0 40.6 1.43914081145585 96 50 63.7 1 358 92 6 101 WP_119015321.1 YccF domain-containing protein [Anaeroplasma bactoclasticum] diamond 603 72.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Anaeroplasmatales Anaeroplasmataceae Anaeroplasma Anaeroplasma bactoclasticum
32112652 32112652 PRJNA980587_P_NODE_22738_length_526_cov_0.966887_g21947_i0 PRJNA980587 22738 526 0.966887 5.08582562 Candidatus Izimaplasma bacterium N/A Bacteria Bacteria 55.1 1.58e-5   NR MCF7923713.1 2315156 g21947 i0 38.2 0.433460076045627 76 42 43.3 2 456 229 154 224 MCF7923713.1 glycoside hydrolase family 16 protein [Candidatus Izimaplasma bacterium] diamond 228 55.1 1 Bacteria   Bacillati Mycoplasmatota Candidatus Izimaplasma       Candidatus Izimaplasma bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;