RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA980587" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA980587 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2231171 2231171 PRJNA980587_P_NODE_56702_length_303_cov_2.186957_g55909_i0 PRJNA980587 56702 303 2.186957 6.62647971 Fibrobacterota 65842 Bacteria Bacteria 145 8.149999999999999e-40   NR NLD98947.1 35828 g55909 i0 93 6.32673267326733 71 5 70.3 0 301 89 283 353 NLD98947.1 type I glyceraldehyde-3-phosphate dehydrogenase [Fibrobacter sp.] diamond 1917 145 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31131769 31131769 PRJNA980587_P_NODE_22635_length_527_cov_2.627753_g21844_i0 PRJNA980587 22635 527 2.627753 13.84825831 Fibrobacter sp. 35828 Bacteria Bacteria 50.4 0.00128   NR MCQ2097203.1 35828 g21844 i0 43.3 0.341555977229602 60 32 34.2 2 4 183 260 317 MCQ2097203.1 T9SS type A sorting domain-containing protein [Fibrobacter sp.] diamond 180 50.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
31416667 31416667 PRJNA980587_P_NODE_90816_length_243_cov_1.764706_g90023_i0 PRJNA980587 90816 243 1.764706 4.28823558 Fibrobacteria bacterium 2725311 Bacteria Bacteria 44.7 0.00771   NR MCB9497627.1 2725311 g90023 i0 45.1 0.62962962962963 51 24 63 1 2 154 247 293 MCB9497627.1 carbohydrate binding domain-containing protein [Fibrobacteria bacterium] diamond 153 44.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;