RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA980587" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA980587 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27120714 27120714 PRJNA980587_P_NODE_27382_length_467_cov_2.670051_g26589_i0 PRJNA980587 27382 467 2.670051 12.46913817 Cetobacterium sp. ZWU 2071632 Bacteria Bacteria 307 2.24e-103   NR WP_047384851.1 1340502 g26589 i0 100 0.995717344753747 155 0 99.6 0 1 465 42 196 WP_047384851.1 Rpn family recombination-promoting nuclease/putative transposase [Cetobacterium sp. ZWU0022] diamond 465 307 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium sp. ZWU0022
28068495 28068495 PRJNA980587_P_NODE_38725_length_376_cov_1.808581_g37932_i0 PRJNA980587 38725 376 1.808581 6.80026456 uncultured Cetobacterium sp. 527638 Bacteria Bacteria 236 2.89e-78   NR WP_293724003.1 527638 g37932 i0 100 0.933510638297872 117 0 93.4 0 26 376 1 117 WP_293724003.1 Fur family transcriptional regulator [uncultured Cetobacterium sp.] diamond 351 236 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium uncultured Cetobacterium sp.
32144244 32144244 PRJNA980587_P_NODE_42838_length_354_cov_1.362989_g42045_i0 PRJNA980587 42838 354 1.362989 4.82498106 unclassified Cetobacterium 2630983 Bacteria Bacteria 234 8.65e-78   NR WP_047382390.1 2630983 g42045 i0 100 0.957627118644068 113 0 95.8 0 341 3 1 113 WP_047382390.1 MULTISPECIES: arsenate reductase family protein [unclassified Cetobacterium] diamond 339 234 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  
32492482 32492482 PRJNA980587_P_NODE_96199_length_232_cov_3.182390_g95406_i0 PRJNA980587 96199 232 3.18239 7.3831448 unclassified Cetobacterium 2630983 Bacteria Bacteria 134 1.92e-37   NR WP_047382694.1 2630983 g95406 i0 98.5 0.879310344827586 68 1 87.9 0 230 27 2 69 WP_047382694.1 MULTISPECIES: glycosyltransferase family 2 protein [unclassified Cetobacterium] diamond 204 134 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;