RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA980585" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA980585 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25181401 25181401 PRJNA980585_P_NODE_8260_length_457_cov_1.187500_g8006_i0 PRJNA980585 8260 457 1.1875 5.426875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 211 2.2e-63   NR BAN33737.1 931554 g8006 i0 71.5 13.2800875273523 144 34 89.9 1 411 1 4 147 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 6069 211 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
27405625 27405625 PRJNA980585_P_NODE_41643_length_251_cov_0.865169_g41389_i0 PRJNA980585 41643 251 0.865169 2.17157419 Amoeba proteus 5775 Tubulinea other_Eukaryota 95.5 6.41e-21   NR AAD37351.1 5775 g41389 i0 59.8 0.9800796812749 82 32 98 1 246 1 50 130 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 246 95.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
30152284 30152284 PRJNA980585_P_NODE_22852_length_307_cov_1.264957_g22598_i0 PRJNA980585 22852 307 1.264957 3.88341799 Amoeba proteus 5775 Tubulinea other_Eukaryota 123 6.609999999999999e-31   NR AAD37351.1 5775 g22598 i0 61.8 1.84690553745928 89 34 87 0 36 302 274 362 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 567 123 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;