RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA980585" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA980585 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21356922 21356922 PRJNA980585_P_NODE_40957_length_251_cov_0.865169_g40703_i0 PRJNA980585 40957 251 0.865169 2.17157419 Leptotrichiaceae bacterium 2782225 Bacteria Bacteria 73.9 4.16e-13   NR MBP7026459.1 2782225 g40703 i0 48.2 1.9840637450199201 83 41 96.8 1 243 1 64 146 MBP7026459.1 arginine--tRNA ligase [Leptotrichiaceae bacterium] diamond 498 73.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae   Leptotrichiaceae bacterium
29173745 29173745 PRJNA980585_P_NODE_21689_length_313_cov_3.191667_g21435_i0 PRJNA980585 21689 313 3.191667 9.98991771 Fusobacterium sp. 68766 Bacteria Bacteria 43.9 0.0326   NR WP_101474947.1 68766 g21435 i0 38.2 0.527156549520767 55 33 52.7 1 207 43 116 169 WP_101474947.1 AAA family ATPase [Fusobacterium sp.] diamond 165 43.9 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;