RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA977246" and tax_phylum = "Thermotogota"

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tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA977246 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26772949 26772949 PRJNA977246_S_NODE_23261_length_277_cov_5.379032_g22269_i0 PRJNA977246 23261 277 5.379032 14.89991864 Fervidobacterium sp. 1871331 Bacteria Bacteria 121 3.5500000000000004e-33   NR MDM7320281.1 1871331 g22269 i0 84.7 0.779783393501805 72 11 78 0 267 52 1 72 MDM7320281.1 hypothetical protein [Fervidobacterium sp.] diamond 216 121 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
27569350 27569350 PRJNA977246_S_NODE_27044_length_246_cov_3.972350_g26052_i0 PRJNA977246 27044 246 3.97235 9.771981 Thermotogati 3384194 Bacteria Bacteria 50.8 5.37e-5   NR WP_287568784.1 1968895 g26052 i0 50.9 4.13414634146341 55 26 65.9 1 166 5 612 666 WP_287568784.1 type IV secretory system conjugative DNA transfer family protein [Thermosipho sp. (in: thermotogales)] diamond 1017 50.8 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho sp. (in: thermotogales)
28447528 28447528 PRJNA977246_S_NODE_28926_length_233_cov_3.397059_g27934_i0 PRJNA977246 28926 233 3.397059 7.91514747 Fervidobacterium sp. 1871331 Bacteria Bacteria 123 1.19e-33   NR MDM7320314.1 1871331 g27934 i0 84.8 0.849785407725322 66 10 85 0 34 231 7 72 MDM7320314.1 hypothetical protein [Fervidobacterium sp.] diamond 198 123 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.
32207491 32207491 PRJNA977246_S_NODE_50438_length_153_cov_1.903226_g49446_i0 PRJNA977246 50438 153 1.903226 2.91193578 Fervidobacterium sp. 1871331 Bacteria Bacteria 48.9 7.06e-5   NR MDM7321177.1 1871331 g49446 i0 87 0.450980392156863 23 3 45.1 0 83 15 1 23 MDM7321177.1 hypothetical protein [Fervidobacterium sp.] diamond 69 48.9 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Fervidobacterium Fervidobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;