RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA977246" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA977246 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27626575 27626575 PRJNA977246_S_NODE_13184_length_410_cov_4806.417323_g12205_i0 PRJNA977246 13184 410 4806.417323 19706.3110243 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 101 3.69e-25   NR AAX31034.1 6182 g12205 i0 84.6 0.380487804878049 52 8 38 0 385 230 38 89 AAX31034.1 unknown [Schistosoma japonicum] diamond 156 101 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
31106402 31106402 PRJNA977246_S_NODE_31355_length_219_cov_2.489474_g30363_i0 PRJNA977246 31355 219 2.489474 5.45194806 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 106 3.06e-27   NR VDM31564.1 6205 g30363 i0 83.6 111.630136986301 55 9 75.3 0 55 219 83 137 VDM31564.1 unnamed protein product [Hydatigera taeniaeformis] diamond 24447 106 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Taeniidae Hydatigera Hydatigera taeniaeformis
31321608 31321608 PRJNA977246_S_NODE_11735_length_440_cov_7.223844_g10775_i0 PRJNA977246 11735 440 7.223844 31.7849136 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 105 1.69e-25   NR AAX25032.2 6182 g10775 i0 63.6 0.6 88 32 60 0 55 318 100 187 AAX25032.2 SJCHGC04714 protein, partial [Schistosoma japonicum] diamond 264 105 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
31353372 31353372 PRJNA977246_S_NODE_25076_length_261_cov_5.038793_g24084_i0 PRJNA977246 25076 261 5.038793 13.15124973 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 49.7 9.55e-6   NR ABA40899.1 6182 g24084 i0 59 0.448275862068966 39 14 42.5 1 181 71 4 42 ABA40899.1 SJCHGC09658 protein, partial [Schistosoma japonicum] diamond 117 49.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;