RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA977246" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA977246 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27847304 27847304 PRJNA977246_S_NODE_47384_length_160_cov_2.244275_g46392_i0 PRJNA977246 47384 160 2.244275 3.59084 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 87.8 1.12e-18   NR CEP02512.1 37360 g46392 i0 76.9 0.975 52 12 97.5 0 157 2 347 398 CEP02512.1 hypothetical protein PBRA_009096 [Plasmodiophora brassicae] diamond 156 87.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28889296 28889296 PRJNA977246_S_NODE_35128_length_201_cov_1.912791_g34136_i0 PRJNA977246 35128 201 1.912791 3.84470991 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 56.2 3.67e-7   NR CEP02238.1 37360 g34136 i0 53.1 0.73134328358209 49 23 73.1 0 53 199 596 644 CEP02238.1 hypothetical protein PBRA_002502 [Plasmodiophora brassicae] diamond 147 56.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32775865 32775865 PRJNA977246_S_NODE_19960_length_310_cov_3.327402_g18968_i0 PRJNA977246 19960 310 3.327402 10.3149462 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 86.7 3.04e-17   NR CEP02862.1 37360 g18968 i0 71.4 0.474193548387097 49 14 47.4 0 305 159 658 706 CEP02862.1 hypothetical protein PBRA_002829 [Plasmodiophora brassicae] diamond 147 86.7 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;