RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA977246" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Discosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA977246 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30562935 30562935 PRJNA977246_S_NODE_26213_length_252_cov_4.354260_g25221_i0 PRJNA977246 26213 252 4.35426 10.9727352 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 97.4 1.86e-21   NR XP_004334851.1 1257118 g25221 i0 84.9 0.630952380952381 53 8 63.1 0 251 93 440 492 XP_004334851.1 fungal Zn(2)-Cys(6) binuclear cluster domain containing protein [Acanthamoeba castellanii str. Neff] diamond 159 97.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32112574 32112574 PRJNA977246_S_NODE_10938_length_459_cov_6.197674_g9995_i0 PRJNA977246 10938 459 6.197674 28.44732366 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 130 1.09e-35   NR XP_004339447.1 1257118 g9995 i0 74 0.503267973856209 77 20 50.3 0 351 121 25 101 XP_004339447.1 ribosomal protein S26e, putative [Acanthamoeba castellanii str. Neff] diamond 231 130 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;