RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA977246" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA977246 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28390309 28390309 PRJNA977246_S_NODE_21566_length_293_cov_3.189394_g20574_i0 PRJNA977246 21566 293 3.189394 9.34492442 root 1 Root_unresolved Root_unresolved 52.4 4.82e-6   NR KAJ3383484.1 109889 g20574 i0 54 2.36518771331058 50 21 51.2 1 290 141 71 118 KAJ3383484.1 profilin, required for normal timing of actin polymerization in response to thermal stress [Lobulomyces angularis] diamond 693 52.8 0.992424242424242 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis
29678388 29678388 PRJNA977246_S_NODE_18390_length_328_cov_591.511706_g17398_i0 PRJNA977246 18390 328 591.511706 1940.15839568 Quaeritorhiza haematococci 2654861 Fungi Fungi 79 2.01e-14   NR KAJ3088323.1 2654861 g17398 i0 36.8 1.84756097560976 106 59 93.3 2 314 9 697 798 KAJ3088323.1 nuA3 HAT complex component nto1, partial [Quaeritorhiza haematococci] diamond 606 79 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes   Quaeritorhizaceae Quaeritorhiza Quaeritorhiza haematococci
29684550 29684550 PRJNA977246_S_NODE_42910_length_172_cov_2.538462_g41918_i0 PRJNA977246 42910 172 2.538462 4.36615464 Chytriomycetaceae 1352827 Fungi Fungi 63.2 9.02e-10   NR KAJ3253536.1 4814 g41918 i0 57.1 6.73255813953488 49 21 85.5 0 13 159 667 715 KAJ3253536.1 hypothetical protein HDU77_004502 [Chytriomyces hyalinus] diamond 1158 63.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces hyalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;