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contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA976345" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 16 ✖

bioproject 1

  • PRJNA976345 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27405531 27405531 PRJNA976345_P_NODE_96583_length_192_cov_2.031847_g94975_i0 PRJNA976345 96583 192 2.031847 3.90114624 Methanocorpusculum sp. 2058474 Archaea Archaea 43.9 0.00708   NR HJJ77687.1 2058474 g94975 i0 46.3 0.640625 41 22 64.1 0 126 4 4 44 HJJ77687.1 hypothetical protein [Methanocorpusculum sp.] diamond 123 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
28131659 28131659 PRJNA976345_P_NODE_133245_length_174_cov_1.323741_g131637_i0 PRJNA976345 133245 174 1.323741 2.30330934 archaeon 1906665 Archaea Archaea 42 0.0267   NR NCN86483.1 1906665 g131637 i0 46.9 0.844827586206897 49 22 84.5 1 155 9 204 248 NCN86483.1 radical SAM protein [archaeon] diamond 147 42 1 Archaea               archaeon
28194465 28194465 PRJNA976345_P_NODE_40526_length_270_cov_3.234043_g38918_i0 PRJNA976345 40526 270 3.234043 8.7319161 Nitrosopumilus sp. 2024843 Archaea Archaea 60.5 2.89e-8   NR MCH2406285.1 2024843 g38918 i0 40 1.78888888888889 85 49 93.3 2 15 266 445 528 MCH2406285.1 hypothetical protein [Nitrosopumilus sp.] diamond 483 60.5 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus sp.
28542167 28542167 PRJNA976345_P_NODE_146927_length_167_cov_3.689394_g145319_i0 PRJNA976345 146927 167 3.689394 6.16128798 Methanocaldococcus sp. 2152917 Archaea Archaea 46.2 7.88e-4   NR WP_297317778.1 2152917 g145319 i0 44.9 0.880239520958084 49 27 88 0 6 152 50 98 WP_297317778.1 GTPase [Methanocaldococcus sp.] diamond 147 46.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus sp.
29205166 29205166 PRJNA976345_P_NODE_100889_length_189_cov_1.961039_g99281_i0 PRJNA976345 100889 189 1.961039 3.70636371 Archaeoglobaceae archaeon 2511821 Archaea Archaea 91.3 1.49e-19   NR MCS7121671.1 2511821 g99281 i0 70.5 8.96825396825397 61 18 96.8 0 183 1 430 490 MCS7121671.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Archaeoglobaceae archaeon] diamond 1695 91.3 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae   Archaeoglobaceae archaeon
29299727 29299727 PRJNA976345_P_NODE_135269_length_173_cov_1.427536_g133661_i0 PRJNA976345 135269 173 1.427536 2.46963728 archaeon 1906665 Archaea Archaea 55.1 2.36e-8   NR RYY86752.1 1906665 g133661 i0 65.2 0.797687861271676 46 16 79.8 0 3 140 5 50 RYY86752.1 MAG: hypothetical protein EON63_05265 [archaeon] diamond 138 55.1 1 Archaea               archaeon
29678298 29678298 PRJNA976345_P_NODE_146630_length_168_cov_1.187970_g145022_i0 PRJNA976345 146630 168 1.18797 1.9957896 archaeon 1906665 Archaea Archaea 60.8 4.39e-9   NR RYG53897.1 1906665 g145022 i0 62.5 0.857142857142857 48 18 85.7 0 23 166 1 48 RYG53897.1 MAG: hypothetical protein EON66_07885 [archaeon] diamond 144 60.8 1 Archaea               archaeon
29962902 29962902 PRJNA976345_P_NODE_128111_length_176_cov_2.340426_g126503_i0 PRJNA976345 128111 176 2.340426 4.11914976 Candidatus Nitrosocosmicus sp. 2109671 Archaea Archaea 45.4 0.00169   NR HKU83278.1 2109671 g126503 i0 44.1 1.00568181818182 59 28 92 2 167 6 194 252 HKU83278.1 reverse transcriptase family protein [Candidatus Nitrosocosmicus sp.] diamond 177 45.4 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus sp.
30562883 30562883 PRJNA976345_P_NODE_87713_length_199_cov_1.725610_g86105_i0 PRJNA976345 87713 199 1.72561 3.4339639 Candidatus Nitrosocosmicus oleophilus 1353260 Archaea Archaea 40.8 0.0255   NR WP_196817592.1 1353260 g86105 i0 42.2 0.678391959798995 45 26 67.8 0 187 53 3 47 WP_196817592.1 hypothetical protein [Candidatus Nitrosocosmicus oleophilus] diamond 135 40.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Candidatus Nitrosocosmicus Candidatus Nitrosocosmicus oleophilus
30562888 30562888 PRJNA976345_P_NODE_95193_length_193_cov_2.126582_g93585_i0 PRJNA976345 95193 193 2.126582 4.10430326 Nitrososphaerota archaeon 2026795 Archaea Archaea 40 0.0439   NR MBI1658427.1 2026795 g93585 i0 50 0.49740932642487 32 16 49.7 0 116 21 44 75 MBI1658427.1 hypothetical protein [Nitrososphaerota archaeon] diamond 96 40 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
30847517 30847517 PRJNA976345_P_NODE_102994_length_188_cov_1.267974_g101386_i0 PRJNA976345 102994 188 1.267974 2.38379112 Candidatus Marsarchaeota archaeon 2823144 Archaea Archaea 43.1 0.0132   NR MCL5427951.1 2823144 g101386 i0 39.3 2.48936170212766 56 33 89.4 1 14 181 442 496 MCL5427951.1 TCP-1/cpn60 chaperonin family protein [Candidatus Marsarchaeota archaeon] diamond 468 43.1 1 Archaea   Thermoproteati Candidatus Marsarchaeota         Candidatus Marsarchaeota archaeon
31574805 31574805 PRJNA976345_P_NODE_34456_length_290_cov_1.839216_g32849_i0 PRJNA976345 34456 290 1.839216 5.3337264 Promethearchaeota archaeon 2053489 Archaea Archaea 47.4 0.00141   NR MBD3352878.1 2053489 g32849 i0 50 1.46896551724138 52 26 53.8 0 289 134 261 312 MBD3352878.1 GTP-binding protein [Promethearchaeota archaeon] diamond 426 47.4 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
32175938 32175938 PRJNA976345_P_NODE_46598_length_255_cov_1.500000_g44990_i0 PRJNA976345 46598 255 1.5 3.825 Candidatus Woesearchaeota archaeon 2026803 Archaea Archaea 42.7 0.00534   NR RLE37447.1 2026803 g44990 i0 37 0.635294117647059 54 34 63.5 0 164 3 6 59 RLE37447.1 MAG: hypothetical protein DRJ17_06615 [Candidatus Woesearchaeota archaeon] diamond 162 42.7 1 Archaea   Nanobdellati Candidatus Woesearchaeota         Candidatus Woesearchaeota archaeon
32492347 32492347 PRJNA976345_P_NODE_64199_length_223_cov_6.218085_g62591_i0 PRJNA976345 64199 223 6.218085 13.86632955 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 65.1 3.83e-10   NR MDW3615052.1 2169593 g62591 i0 42.6 1.80269058295964 68 39 91.5 0 1 204 60 127 MDW3615052.1 ribonuclease H family protein [Nitrososphaeraceae archaeon] diamond 402 65.1 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon
32681095 32681095 PRJNA976345_P_NODE_112320_length_182_cov_1.619048_g110712_i0 PRJNA976345 112320 182 1.619048 2.94666736 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 45.8 0.0013   NR WP_288267568.1 253161 g110712 i0 50 0.659340659340659 40 20 65.9 0 31 150 257 296 WP_288267568.1 RHS repeat-associated core domain-containing protein [uncultured Methanobrevibacter sp.] diamond 120 45.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32807293 32807293 PRJNA976345_P_NODE_131220_length_175_cov_1.328571_g129612_i0 PRJNA976345 131220 175 1.328571 2.32499925 Candidatus Pacearchaeota archaeon 2026773 Archaea Archaea 77.4 9.09e-15   NR MCK5611892.1 2026773 g129612 i0 62.1 0.994285714285714 58 22 99.4 0 175 2 701 758 MCK5611892.1 hypothetical protein [Candidatus Pacearchaeota archaeon] diamond 174 77.4 1 Archaea Candidatus Pacearchaeota Nanobdellati           Candidatus Pacearchaeota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;