RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA976345" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA976345 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28320903 28320903 PRJNA976345_P_NODE_174926_length_157_cov_1.754098_g173318_i0 PRJNA976345 174926 157 1.754098 2.75393386 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 80.1 2.25e-16   NR NLY83779.1 1898209 g173318 i0 88.4 0.821656050955414 43 5 82.2 0 157 29 231 273 NLY83779.1 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Acholeplasmataceae bacterium] diamond 129 80.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
29362966 29362966 PRJNA976345_P_NODE_152749_length_165_cov_1.776923_g151141_i0 PRJNA976345 152749 165 1.776923 2.93192295 Mycoplasmoidaceae bacterium 2854035 Bacteria Bacteria 41.2 0.0299   NR GMO18813.1 2854035 g151141 i0 33.3 0.818181818181818 45 27 81.8 1 8 142 46 87 GMO18813.1 MAG: hypothetical protein Ta2E_09620 [Mycoplasmoidaceae bacterium] diamond 135 41.2 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae   Mycoplasmoidaceae bacterium
30437087 30437087 PRJNA976345_P_NODE_183633_length_154_cov_2.344538_g182025_i0 PRJNA976345 183633 154 2.344538 3.61058852 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 38.9 0.0403   NR MCI6108431.1 2231116 g182025 i0 47.2 0.701298701298701 36 19 70.1 0 45 152 8 43 MCI6108431.1 hypothetical protein [Mycoplasmatota bacterium] diamond 108 38.9 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;