RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA976345" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA976345 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27405531 27405531 PRJNA976345_P_NODE_96583_length_192_cov_2.031847_g94975_i0 PRJNA976345 96583 192 2.031847 3.90114624 Methanocorpusculum sp. 2058474 Archaea Archaea 43.9 0.00708   NR HJJ77687.1 2058474 g94975 i0 46.3 0.640625 41 22 64.1 0 126 4 4 44 HJJ77687.1 hypothetical protein [Methanocorpusculum sp.] diamond 123 43.9 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum sp.
28542167 28542167 PRJNA976345_P_NODE_146927_length_167_cov_3.689394_g145319_i0 PRJNA976345 146927 167 3.689394 6.16128798 Methanocaldococcus sp. 2152917 Archaea Archaea 46.2 7.88e-4   NR WP_297317778.1 2152917 g145319 i0 44.9 0.880239520958084 49 27 88 0 6 152 50 98 WP_297317778.1 GTPase [Methanocaldococcus sp.] diamond 147 46.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus sp.
29205166 29205166 PRJNA976345_P_NODE_100889_length_189_cov_1.961039_g99281_i0 PRJNA976345 100889 189 1.961039 3.70636371 Archaeoglobaceae archaeon 2511821 Archaea Archaea 91.3 1.49e-19   NR MCS7121671.1 2511821 g99281 i0 70.5 8.96825396825397 61 18 96.8 0 183 1 430 490 MCS7121671.1 DNA topoisomerase (ATP-hydrolyzing) subunit B [Archaeoglobaceae archaeon] diamond 1695 91.3 1 Archaea   Methanobacteriati Methanobacteriota Archaeoglobi Archaeoglobales Archaeoglobaceae   Archaeoglobaceae archaeon
32681095 32681095 PRJNA976345_P_NODE_112320_length_182_cov_1.619048_g110712_i0 PRJNA976345 112320 182 1.619048 2.94666736 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 45.8 0.0013   NR WP_288267568.1 253161 g110712 i0 50 0.659340659340659 40 20 65.9 0 31 150 257 296 WP_288267568.1 RHS repeat-associated core domain-containing protein [uncultured Methanobrevibacter sp.] diamond 120 45.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;