RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA975724" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11470660 11470660 PRJNA975724_S_NODE_5809_length_506_cov_7.563510_g5630_i0 PRJNA975724 5809 506 7.56351 38.2713606 root 1 Root_unresolved Root_unresolved 126 3.56e-31   NR MBC7465500.1 28201 g5630 i0 73.3 10.6778656126482 86 23 51 0 506 249 304 389 MBC7465500.1 cystathionine gamma-synthase [Bdellovibrio sp.] diamond 5403 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
26994110 26994110 PRJNA975724_S_NODE_22522_length_375_cov_2.248344_g22341_i0 PRJNA975724 22522 375 2.248344 8.43129 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 153 2.97e-42   NR MCC2679291.1 2862747 g22341 i0 76 0.768 96 23 76.8 0 2 289 284 379 MCC2679291.1 cystathionine gamma-lyase [Pseudobdellovibrio sp.] diamond 288 153 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
27443420 27443420 PRJNA975724_S_NODE_71123_length_261_cov_1.228723_g70942_i0 PRJNA975724 71123 261 1.228723 3.20696703 Bdellovibrio 958 Bacteria Bacteria 144 9.349999999999999e-42   NR OYZ21784.1 1970323 g70942 i0 77.9 2.96551724137931 86 19 98.9 0 259 2 59 144 OYZ21784.1 MAG: hypothetical protein B7Y39_08430 [Bdellovibrio sp. 28-41-41] diamond 774 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41
27815940 27815940 PRJNA975724_S_NODE_86164_length_245_cov_0.895349_g85983_i0 PRJNA975724 86164 245 0.895349 2.19360505 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 99.4 2.0299999999999998e-23   NR MBL7554494.1 2026715 g85983 i0 98.2 0.673469387755102 55 1 67.3 0 244 80 51 105 MBL7554494.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 165 99.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
29678270 29678270 PRJNA975724_S_NODE_42330_length_314_cov_1.917012_g42149_i0 PRJNA975724 42330 314 1.917012 6.01941768 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 166 4.99e-50   NR MBL7543824.1 2026715 g42149 i0 79.6 0.984076433121019 103 20 97.5 1 8 313 32 134 MBL7543824.1 Hsp20/alpha crystallin family protein [Pseudobdellovibrionaceae bacterium] diamond 309 166 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31384962 31384962 PRJNA975724_S_NODE_82816_length_247_cov_2.931034_g82635_i0 PRJNA975724 82816 247 2.931034 7.23965398 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 110 5.4300000000000006e-27   NR MES2801063.1 3034175 g82635 i0 63.2 1.91902834008097 76 27 92.3 1 235 8 246 320 MES2801063.1 hypothetical protein [Bdellovibrionota bacterium] diamond 474 110 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;