RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA975724" and tax_phylum = "Bacillota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bacillota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA975724 · 32 ✖

analysis 1

  • diamond · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
946358 946358 PRJNA975724_S_NODE_48841_length_300_cov_0.678414_g48660_i0 PRJNA975724 48841 300 0.678414 2.035242 Geobacillus thermoleovorans 33941 Bacteria Bacteria 62.4 3.3e-9   NR AZM68782.1 33941 g48660 i0 67.3 0.49 49 15 49 1 196 50 13 60 AZM68782.1 hypothetical protein, partial [Geobacillus thermoleovorans] diamond 147 62.4 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans
21348163 21348163 PRJNA975724_S_NODE_39577_length_321_cov_0.931452_g39396_i0 PRJNA975724 39577 321 0.931452 2.98996092 Clostridium botulinum 1491 Bacteria Bacteria 201 1.68e-62   NR WP_061334072.1 1491 g39396 i0 90.5 0.981308411214953 105 10 98.1 0 319 5 25 129 WP_061334072.1 hypothetical protein [Clostridium botulinum] diamond 315 201 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum
26772839 26772839 PRJNA975724_S_NODE_79221_length_250_cov_2.096045_g79040_i0 PRJNA975724 79221 250 2.096045 5.2401125 Haloimpatiens massiliensis 1658110 Bacteria Bacteria 122 3.3499999999999996e-30   NR WP_102400198.1 1658110 g79040 i0 75.3 0.924 77 19 92.4 0 232 2 354 430 WP_102400198.1 phage minor capsid protein [Haloimpatiens massiliensis] diamond 231 122 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Haloimpatiens Haloimpatiens massiliensis
27089329 27089329 PRJNA975724_S_NODE_25202_length_365_cov_1.421233_g25021_i0 PRJNA975724 25202 365 1.421233 5.18750045 Blautia coccoides 33035 Bacteria Bacteria 109 3.4900000000000006e-27   NR WP_320960698.1 1532 g25021 i0 52.4 1.03561643835616 126 55 99.5 2 1 363 59 184 WP_320960698.1 SHOCT domain-containing protein [Blautia coccoides] diamond 378 109 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Blautia Blautia coccoides
27151987 27151987 PRJNA975724_S_NODE_44482_length_309_cov_1.559322_g44301_i0 PRJNA975724 44482 309 1.559322 4.81830498 Clostridiales bacterium 1898207 Bacteria Bacteria 44.3 0.0237   NR MCI8387638.1 1898207 g44301 i0 39.6 0.514563106796116 53 27 50.5 2 222 67 597 645 MCI8387638.1 glycoside hydrolase family 95 protein [Clostridiales bacterium] diamond 159 44.3 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales     Clostridiales bacterium
27380130 27380130 PRJNA975724_S_NODE_93983_length_226_cov_4.725490_g93802_i0 PRJNA975724 93983 226 4.72549 10.6796074 Bacillati 1783272 Bacteria Bacteria 43.9 0.0113   NR WP_218230774.1 44249 g93802 i0 54.5 2.96017699115044 33 15 43.8 0 225 127 289 321 WP_218230774.1 MULTISPECIES: GDP-mannose 4,6-dehydratase [Paenibacillus] diamond 669 43.9 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus  
27405455 27405455 PRJNA975724_S_NODE_74863_length_256_cov_1.081967_g74682_i0 PRJNA975724 74863 256 1.081967 2.76983552 Bacillota bacterium 1879010 Bacteria Bacteria 61.2 9.2e-9   NR MEY4480598.1 1879010 g74682 i0 43.2 0.94921875 81 41 94.9 2 244 2 197 272 MEY4480598.1 hypothetical protein [Bacillota bacterium] diamond 243 61.2 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
27468537 27468537 PRJNA975724_S_NODE_34483_length_334_cov_1.954023_g34302_i0 PRJNA975724 34483 334 1.954023 6.52643682 Clostridium botulinum 1491 Bacteria Bacteria 94.7 3.2699999999999995e-23   NR WP_154219906.1 1491 g34302 i0 83.6 0.494011976047904 55 9 49.4 0 265 101 1 55 WP_154219906.1 hypothetical protein [Clostridium botulinum] diamond 165 94.7 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium botulinum
27500100 27500100 PRJNA975724_S_NODE_38403_length_324_cov_1.027888_g38222_i0 PRJNA975724 38403 324 1.027888 3.33035712 Clostridium moutaii 3240932 Bacteria Bacteria 187 5.309999999999999e-55   NR WP_369705087.1 3240932 g38222 i0 87 0.925925925925926 100 13 92.6 0 25 324 277 376 WP_369705087.1 phage terminase large subunit [Clostridium moutaii] diamond 300 187 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium moutaii
27853507 27853507 PRJNA975724_S_NODE_82624_length_248_cov_0.880000_g82443_i0 PRJNA975724 82624 248 0.88 2.1824 Lachnospiraceae 186803 Bacteria Bacteria 42.7 0.0407   NR WP_306561511.1 208479 g82443 i0 54.3 1.27016129032258 35 15 42.3 1 110 214 1036 1069 WP_306561511.1 SpaA isopeptide-forming pilin-related protein, partial [Enterocloster bolteae] diamond 315 42.7 1 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae Enterocloster Enterocloster bolteae
28042988 28042988 PRJNA975724_S_NODE_52865_length_292_cov_0.958904_g52684_i0 PRJNA975724 52865 292 0.958904 2.79999968 Bacteria 2 Bacteria Bacteria 95.5 3.9e-22   NR MCL5677544.1 1879010 g52684 i0 46.7 1.89041095890411 90 40 92.5 3 288 19 39 120 MCL5677544.1 FMN-binding negative transcriptional regulator [Bacillota bacterium] diamond 552 95.5 1 Bacteria   Bacillati Bacillota         Bacillota bacterium
28042989 28042989 PRJNA975724_S_NODE_63125_length_273_cov_2.380000_g62944_i0 PRJNA975724 63125 273 2.38 6.4974 Bacillota 1239 Bacteria Bacteria 62.8 4.69e-9   NR WP_206095043.1 46240 g62944 i0 77.5 2.26373626373626 40 9 44 0 240 121 401 440 WP_206095043.1 L-threonylcarbamoyladenylate synthase [Paenibacillus apiarius] diamond 618 62.8 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Paenibacillus Paenibacillus apiarius
28163159 28163159 PRJNA975724_S_NODE_49705_length_298_cov_1.284444_g49524_i0 PRJNA975724 49705 298 1.284444 3.82764312 Alicyclobacillus sp. 61169 Bacteria Bacteria 63.2 3.87e-9   NR MCL6514288.1 61169 g49524 i0 65.1 0.865771812080537 43 15 43.3 0 296 168 292 334 MCL6514288.1 NADP-dependent oxidoreductase [Alicyclobacillus sp.] diamond 258 63.2 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Alicyclobacillaceae Alicyclobacillus Alicyclobacillus sp.
28636887 28636887 PRJNA975724_S_NODE_68047_length_265_cov_3.515625_g67866_i0 PRJNA975724 68047 265 3.515625 9.31640625 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 60.5 2.77e-8   NR MDD6063132.1 2485925 g67866 i0 47.3 0.622641509433962 55 27 62.3 1 264 100 458 510 MDD6063132.1 glycerol kinase GlpK [Oscillospiraceae bacterium] diamond 165 60.5 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
28889169 28889169 PRJNA975724_S_NODE_33648_length_337_cov_0.875000_g33467_i0 PRJNA975724 33648 337 0.875 2.94875 Clostridium polynesiense 1325933 Bacteria Bacteria 46.2 0.00601   NR WP_040214284.1 1325933 g33467 i0 28.2 0.979228486646884 110 75 94.4 1 15 332 262 371 WP_040214284.1 tyrosine--tRNA ligase [Clostridium polynesiense] diamond 330 46.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium polynesiense
28895365 28895365 PRJNA975724_S_NODE_51508_length_294_cov_1.855204_g51327_i0 PRJNA975724 51508 294 1.855204 5.45429976 Parvimonas 543311 Bacteria Bacteria 73.2 3.1e-14   NR WP_233055584.1 543311 g51327 i0 66 5.13265306122449 47 16 48 0 276 136 56 102 WP_233055584.1 MULTISPECIES: 50S ribosomal protein L19 [Parvimonas] diamond 1509 73.2 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Parvimonas  
28990517 28990517 PRJNA975724_S_NODE_44768_length_308_cov_2.446809_g44587_i0 PRJNA975724 44768 308 2.446809 7.53617172 Bacillota 1239 Bacteria Bacteria 45.1 0.0111   NR NLB03999.1 1938886 g44587 i0 44.9 0.974025974025974 49 26 47.7 1 306 160 257 304 NLB03999.1 pyrimidine-specific ribonucleoside hydrolase RihA [Fastidiosipila sp.] diamond 300 45.4 0.993392070484582 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae Fastidiosipila Fastidiosipila sp.
29110376 29110376 PRJNA975724_S_NODE_16528_length_404_cov_1.933535_g16347_i0 PRJNA975724 16528 404 1.933535 7.8114814 Clostridium massiliodielmoense 1776385 Bacteria Bacteria 147 1.47e-42   NR WP_085829367.1 1776385 g16347 i0 74 0.772277227722772 104 24 77.2 1 93 404 1 101 WP_085829367.1 helix-turn-helix domain-containing protein [Clostridium massiliodielmoense] diamond 312 147 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium massiliodielmoense
29552097 29552097 PRJNA975724_S_NODE_67010_length_267_cov_1.649485_g66829_i0 PRJNA975724 67010 267 1.649485 4.40412495 Ligilactobacillus pobuzihii 449659 Bacteria Bacteria 60.1 3.32e-8   NR WP_206463185.1 449659 g66829 i0 40.5 0.831460674157303 74 43 83.1 1 19 240 237 309 WP_206463185.1 nucleoside hydrolase [Ligilactobacillus pobuzihii] diamond 222 60.1 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Lactobacillaceae Ligilactobacillus Ligilactobacillus pobuzihii
29937569 29937569 PRJNA975724_S_NODE_45551_length_307_cov_0.987179_g45370_i0 PRJNA975724 45551 307 0.987179 3.03063953 Bacillati 1783272 Bacteria Bacteria 43.1 0.0176   NR MEE0107815.1 1935201 g45370 i0 29.7 1.11400651465798 74 49 72.3 1 2 223 48 118 MEE0107815.1 F0F1 ATP synthase subunit alpha [Merdibacter sp.] diamond 342 43.5 0.990804597701149 Bacteria   Bacillati Bacillota Erysipelotrichia Erysipelotrichales Erysipelotrichaceae Merdibacter Merdibacter sp.
30279142 30279142 PRJNA975724_S_NODE_70292_length_262_cov_1.523810_g70111_i0 PRJNA975724 70292 262 1.52381 3.9923822 Clostridiaceae bacterium 1898204 Bacteria Bacteria 46.2 0.00259   NR NBI81434.1 1898204 g70111 i0 37.2 0.893129770992366 78 47 87 1 262 35 77 154 NBI81434.1 hypothetical protein [Clostridiaceae bacterium] diamond 234 46.2 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae   Clostridiaceae bacterium
30626159 30626159 PRJNA975724_S_NODE_76833_length_253_cov_1.283333_g76652_i0 PRJNA975724 76833 253 1.283333 3.24683249 Evtepia gabavorous 2211183 Bacteria Bacteria 44.3 0.0102   NR MFR1233307.1 2211183 g76652 i0 44.1 0.699604743083004 59 27 70 3 72 248 172 224 MFR1233307.1 hypothetical protein [Evtepia gabavorous] diamond 177 44.3 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales   Evtepia Evtepia gabavorous
30657920 30657920 PRJNA975724_S_NODE_86853_length_244_cov_1.801170_g86672_i0 PRJNA975724 86853 244 1.80117 4.3948548 Clostridia bacterium 2044939 Bacteria Bacteria 62.8 3.38e-9   NR MBR3673661.1 2044939 g86672 i0 43.5 1.69672131147541 69 37 84.8 1 237 31 235 301 MBR3673661.1 hypothetical protein [Clostridia bacterium] diamond 414 62.8 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium
30885318 30885318 PRJNA975724_S_NODE_36194_length_329_cov_3.964844_g36013_i0 PRJNA975724 36194 329 3.964844 13.04433676 Lachnoclostridium 1506553 Bacteria Bacteria 128 2.95e-33   NR MCI9133571.1 1898203 g36013 i0 67.1 17.1702127659574 82 27 74.8 0 21 266 258 339 MCI9133571.1 UDP-glucose 4-epimerase GalE [Lachnospiraceae bacterium] diamond 5649 129 0.992248062015504 Bacteria   Bacillati Bacillota Clostridia Lachnospirales Lachnospiraceae   Lachnospiraceae bacterium
30948716 30948716 PRJNA975724_S_NODE_46094_length_305_cov_2.987069_g45913_i0 PRJNA975724 46094 305 2.987069 9.11056045 FCB group 1783270 Bacteria Bacteria 52 1.19e-5   NR WP_043070827.1 47500 g45913 i0 32 3.71803278688525 75 48 73.8 1 8 232 79 150 WP_043070827.1 OsmC family protein [Aneurinibacillus migulanus] diamond 1134 52.4 0.99236641221374 Bacteria   Bacillati Bacillota Bacilli Bacillales Paenibacillaceae Aneurinibacillus Aneurinibacillus migulanus
31005483 31005483 PRJNA975724_S_NODE_72554_length_259_cov_1.241935_g72373_i0 PRJNA975724 72554 259 1.241935 3.21661165 Oscillospiraceae bacterium 2485925 Bacteria Bacteria 43.5 0.0226   NR MCI8657010.1 2485925 g72373 i0 44.3 0.706563706563707 61 30 66 1 39 209 130 190 MCI8657010.1 polysaccharide pyruvyl transferase CsaB [Oscillospiraceae bacterium] diamond 183 43.5 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Oscillospiraceae   Oscillospiraceae bacterium
31068863 31068863 PRJNA975724_S_NODE_68755_length_264_cov_2.183246_g68574_i0 PRJNA975724 68755 264 2.183246 5.76376944 Clostridium cadaveris 1529 Bacteria Bacteria 135 3.56e-38   NR WP_230029348.1 1529 g68574 i0 71.1 0.943181818181818 83 24 94.3 0 14 262 104 186 WP_230029348.1 hypothetical protein [Clostridium cadaveris] diamond 249 135 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium cadaveris
31289801 31289801 PRJNA975724_S_NODE_51735_length_294_cov_1.045249_g51554_i0 PRJNA975724 51735 294 1.045249 3.07303206 Vagococcus coleopterorum 2714946 Bacteria Bacteria 62.4 4.09e-9   NR WP_166008054.1 2714946 g51554 i0 41.7 1.77551020408163 84 46 82.7 2 271 29 12 95 WP_166008054.1 SDR family NAD(P)-dependent oxidoreductase [Vagococcus coleopterorum] diamond 522 62.4 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Vagococcus Vagococcus coleopterorum
31637753 31637753 PRJNA975724_S_NODE_90256_length_242_cov_0.911243_g90075_i0 PRJNA975724 90256 242 0.911243 2.20520806 Clostridium sp. 1506 Bacteria Bacteria 57.8 5.3e-9   NR WP_309451923.1 1506 g90075 i0 52.4 0.78099173553719 63 26 74.4 3 61 240 1 62 WP_309451923.1 uL14 family ribosomal protein, partial [Clostridium sp.] diamond 189 57.8 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium sp.
31985703 31985703 PRJNA975724_S_NODE_4138_length_546_cov_4.849894_g3960_i0 PRJNA975724 4138 546 4.849894 26.48042124 Geobacillus thermoleovorans 33941 Bacteria Bacteria 148 2.689999999999999e-41   NR AZM68782.1 33941 g3960 i0 69.1 0.763736263736264 139 38 76.4 5 130 546 13 146 AZM68782.1 hypothetical protein, partial [Geobacillus thermoleovorans] diamond 417 148 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Anoxybacillaceae Geobacillus Geobacillus thermoleovorans
32460563 32460563 PRJNA975724_S_NODE_37459_length_326_cov_1.853755_g37278_i0 PRJNA975724 37459 326 1.853755 6.0432413 Clostridium algidicarnis 37659 Bacteria Bacteria 149 6.779999999999998e-43   NR WP_185161743.1 37659 g37278 i0 76.7 1.73926380368098 103 21 92 2 300 1 88 190 WP_185161743.1 phage scaffolding protein [Clostridium algidicarnis] diamond 567 149 1 Bacteria   Bacillati Bacillota Clostridia Eubacteriales Clostridiaceae Clostridium Clostridium algidicarnis
32530212 32530212 PRJNA975724_S_NODE_92939_length_233_cov_3.368750_g92758_i0 PRJNA975724 92939 233 3.36875 7.8491875 Bacillaceae 186817 Bacteria Bacteria 63.9 1.07e-9   NR WP_078380313.1 79882 g92758 i0 54.3 3.42489270386266 46 21 59.2 0 1 138 376 421 WP_078380313.1 peptidase [Sutcliffiella halmapala] diamond 798 63.9 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Sutcliffiella Sutcliffiella halmapala

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;