RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA975724" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA975724 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19118146 19118146 PRJNA975724_S_NODE_10235_length_448_cov_3.266667_g10054_i0 PRJNA975724 10235 448 3.266667 14.63466816 Pseudothermotoga 1643951 Bacteria Bacteria 130 8e-34   NR WP_012003775.1 1643951 g10054 i0 52.8 0.837053571428571 125 57 83.7 2 423 49 196 318 WP_012003775.1 MULTISPECIES: potassium channel beta subunit family protein [Pseudothermotoga] diamond 375 130 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Pseudothermotoga  
27120522 27120522 PRJNA975724_S_NODE_88582_length_243_cov_1.123529_g88401_i0 PRJNA975724 88582 243 1.123529 2.73017547 Deinococcus ficus 317577 Bacteria Bacteria 49.7 1.24e-4   NR WP_027463593.1 317577 g88401 i0 70.3 0.45679012345679 37 11 45.7 0 242 132 289 325 WP_027463593.1 malate dehydrogenase [Deinococcus ficus] diamond 111 49.7 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus
28636885 28636885 PRJNA975724_S_NODE_65727_length_269_cov_1.755102_g65546_i0 PRJNA975724 65727 269 1.755102 4.72122438 Calidithermus timidus 307124 Bacteria Bacteria 84.3 1.19e-16   NR WP_018465074.1 307124 g65546 i0 54.5 0.736059479553903 66 30 73.6 0 249 52 722 787 WP_018465074.1 penicillin acylase family protein [Calidithermus timidus] diamond 198 84.3 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Calidithermus Calidithermus timidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;