RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA975724" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA975724 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28485067 28485067 PRJNA975724_S_NODE_24806_length_366_cov_3.627986_g24625_i0 PRJNA975724 24806 366 3.627986 13.27842876 Lujinxingia 2653226 Bacteria Bacteria 86.7 6.81e-17   NR WP_111730078.1 2211119 g24625 i0 56.9 7.98360655737705 72 31 59 0 366 151 1914 1985 WP_111730078.1 alpha-2-macroglobulin family protein [Lujinxingia litoralis] diamond 2922 87 0.996551724137931 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia litoralis
31131576 31131576 PRJNA975724_S_NODE_91855_length_240_cov_3.574850_g91674_i0 PRJNA975724 91855 240 3.57485 8.57964 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2 2013747 Bacteria Bacteria 47 6.81e-4   NR PKN46214.1 2013748 g91674 i0 47.9 1.125 48 23 60 1 217 74 140 185 PKN46214.1 MAG: macrodomain protein [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20] diamond 270 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-20
32781842 32781842 PRJNA975724_S_NODE_1400_length_734_cov_4.080182_g1250_i0 PRJNA975724 1400 734 4.080182 29.94853588 Bacteria 2 Bacteria Bacteria 82.4 7.44e-14   NR OGQ23606.1 1797862 g1250 i0 52.1 1.44686648501362 71 32 28.2 1 734 528 1000 1070 OGQ23606.1 MAG: carbamoyl phosphate synthase large subunit [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16] diamond 1062 83.2 0.990384615384615 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;