RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA971593" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA971593 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26931048 26931048 PRJNA971593_P_NODE_1802_length_872_cov_2.833542_g1681_i0 PRJNA971593 1802 872 2.833542 24.70848624 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 258 5.47e-81   NR XP_013753886.1 461836 g1681 i0 47.3 1.0045871559633 292 140 97 8 27 872 5 292 XP_013753886.1 cysteine proteinase 1 [Thecamonas trahens ATCC 50062] diamond 876 258 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27405395 27405395 PRJNA971593_P_NODE_23243_length_250_cov_0.870056_g23094_i0 PRJNA971593 23243 250 0.870056 2.17514 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 103 2.2699999999999994e-23   NR XP_013758219.1 461836 g23094 i0 69.2 0.936 78 23 92.4 1 231 1 1759 1836 XP_013758219.1 uncharacterized protein AMSG_11840 [Thecamonas trahens ATCC 50062] diamond 234 103 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
27910086 27910086 PRJNA971593_P_NODE_10585_length_372_cov_1.043478_g10436_i0 PRJNA971593 10585 372 1.043478 3.88173816 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 43.5 0.0134   NR XP_013757921.1 461836 g10436 i0 38.9 0.435483870967742 54 33 43.5 0 372 211 32 85 XP_013757921.1 uncharacterized protein AMSG_11880 [Thecamonas trahens ATCC 50062] diamond 162 43.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29931376 29931376 PRJNA971593_P_NODE_3511_length_645_cov_1.211538_g3367_i0 PRJNA971593 3511 645 1.211538 7.8144201 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 163 4.4799999999999984e-43   NR XP_013759408.1 461836 g3367 i0 38.8 0.995348837209302 214 128 99.5 2 3 644 144 354 XP_013759408.1 stress protein [Thecamonas trahens ATCC 50062] diamond 642 163 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31359562 31359562 PRJNA971593_P_NODE_22576_length_250_cov_2.067797_g22427_i0 PRJNA971593 22576 250 2.067797 5.1694925 root 1 Root_unresolved Root_unresolved 89 2.23e-18   NR XP_013762274.1 461836 g22427 i0 55.6 4.932 81 35 97.2 1 249 7 522 601 XP_013762274.1 uncharacterized protein AMSG_01102 [Thecamonas trahens ATCC 50062] diamond 1233 89 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31922468 31922468 PRJNA971593_P_NODE_25837_length_246_cov_0.890173_g25688_i0 PRJNA971593 25837 246 0.890173 2.18982558 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 74.3 2.85e-13   NR XP_013758095.1 461836 g25688 i0 57.7 2.13414634146341 52 18 63.4 1 242 87 478 525 XP_013758095.1 IBR domain-containing protein [Thecamonas trahens ATCC 50062] diamond 525 74.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;