RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA966993" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA966993 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
942004 942004 PRJNA966993_P_NODE_28101_length_399_cov_1.794479_g27652_i0 PRJNA966993 28101 399 1.794479 7.15997121 Amoeba proteus 5775 Tubulinea other_Eukaryota 235 6.3e-74   NR AAP88974.1 5775 g27652 i0 86.4 0.992481203007519 132 18 99.2 0 1 396 172 303 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 396 235 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
26899415 26899415 PRJNA966993_P_NODE_96681_length_242_cov_1.822485_g96229_i0 PRJNA966993 96681 242 1.822485 4.4104137 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 69.7 6.13e-13   NR ABD72565.1 5778 g96229 i0 68.3 0.508264462809917 41 13 50.8 0 3 125 59 99 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 123 69.7 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28163031 28163031 PRJNA966993_P_NODE_26465_length_410_cov_1.827893_g26017_i0 PRJNA966993 26465 410 1.827893 7.4943613 Copromyxa protea 931554 Tubulinea other_Eukaryota 254 1.93e-80   NR BAN33737.1 931554 g26017 i0 87.5 0.995121951219512 136 17 99.5 0 408 1 296 431 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 408 254 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;