RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA966993" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA966993 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28194292 28194292 PRJNA966993_P_NODE_43766_length_326_cov_1.818182_g43314_i0 PRJNA966993 43766 326 1.818182 5.92727332 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 62.4 7.87e-10   NR MCK9289962.1 1898209 g43314 i0 63.6 1.21472392638037 44 16 40.5 0 133 2 8 51 MCK9289962.1 thymidine kinase [Acholeplasmataceae bacterium] diamond 396 62.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
28825777 28825777 PRJNA966993_P_NODE_99708_length_240_cov_2.682635_g99256_i0 PRJNA966993 99708 240 2.682635 6.438324 Candidatus Izimaplasma bacterium HR2 1541960 Bacteria Bacteria 45.4 0.00345   NR KFZ26575.1 1541960 g99256 i0 45.6 1.4375 57 31 71.3 0 68 238 178 234 KFZ26575.1 MAG: DNA ligase [Candidatus Izimaplasma bacterium HR2] diamond 345 45.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Izemoplasma Candidatus Izimoplasma sp. HR2
30120536 30120536 PRJNA966993_P_NODE_30492_length_384_cov_5.257235_g30040_i0 PRJNA966993 30492 384 5.257235 20.1877824 Candidatus Moeniiplasma glomeromycotorum 1822367 Bacteria Bacteria 62 7.24e-9   NR MCE8162780.1 1822367 g30040 i0 31.3 0.7734375 99 66 77.3 1 358 62 81 177 MCE8162780.1 hypothetical protein [Candidatus Moeniiplasma glomeromycotorum] diamond 297 62 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Candidatus Moeniiplasma Candidatus Moeniiplasma glomeromycotorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;