RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA951810" and tax_phylum = "Candidatus Lindowiibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Lindowiibacteriota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA951810 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28162801 28162801 PRJNA951810_P_NODE_136845_length_268_cov_2.692308_g136500_i0 PRJNA951810 136845 268 2.692308 7.21538544 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_ 2750076 Bacteria Bacteria 82.4 5.62e-16   NR OGH56668.1 1817869 g136500 i0 42.7 0.996268656716418 89 50 98.5 1 268 5 62 150 OGH56668.1 MAG: hypothetical protein A3I06_07450 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12] diamond 267 82.4 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12
31226257 31226257 PRJNA951810_P_NODE_39015_length_312_cov_6.439331_g38672_i0 PRJNA951810 39015 312 6.439331 20.09071272 Candidatus Lindowbacteria bacterium RIFCSPLOWO2_ 2750076 Bacteria Bacteria 130 1.42e-32   NR OGH56668.1 1817869 g38672 i0 58 1.95192307692308 100 41 96.2 1 310 11 259 357 OGH56668.1 MAG: hypothetical protein A3I06_07450 [Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12] diamond 609 130 1 Bacteria Bacteria candidate phyla   Candidatus Lindowiibacteriota         Candidatus Lindowbacteria bacterium RIFCSPLOWO2_02_FULL_62_12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;