RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA951412" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA951412 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16237601 16237601 PRJNA951412_P_NODE_2153_length_318_cov_2.069388_g2068_i0 PRJNA951412 2153 318 2.069388 6.58065384 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 90.9 5.33e-19   NR XP_001022365.1 312017 g2068 i0 40.9 3.18867924528302 110 60 99.1 2 316 2 28 137 XP_001022365.1 papain family cysteine protease [Tetrahymena thermophila SB210] diamond 1014 90.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
31637332 31637332 PRJNA951412_P_NODE_3036_length_281_cov_1.110577_g2951_i0 PRJNA951412 3036 281 1.110577 3.12072137 Blepharisma stoltei 1481888 SAR_Eukaryotes SAR_Eukaryotes 101 1.56e-22   NR CAG9335546.1 1481888 g2951 i0 56.5 1.80427046263345 85 37 90.7 0 256 2 153 237 CAG9335546.1 unnamed protein product [Blepharisma stoltei] diamond 507 101 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Blepharismidae Blepharisma Blepharisma stoltei
32750466 32750466 PRJNA951412_P_NODE_2920_length_284_cov_1.473934_g2835_i0 PRJNA951412 2920 284 1.473934 4.18597256 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 119 4.45e-32   NR Q00454.1 5911 g2835 i0 69.9 7.94366197183099 83 22 87.7 1 281 33 70 149 Q00454.1 RecName: Full=Large ribosomal subunit protein uL15; AltName: Full=60S ribosomal protein L27a [Tetrahymena thermophila] diamond 2256 119 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;