RNAquarium Metadata Server
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contig_metadata

11 rows where analysis = "diamond", bioproject = "PRJNA951412" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951412 · 11 ✖

analysis 1

  • diamond · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
934814 934814 PRJNA951412_P_NODE_2821_length_287_cov_2.168224_g2736_i0 PRJNA951412 2821 287 2.168224 6.22280288 Metazoa 33208 Chordata Chordata 118 1.94e-29   NR XP_042324725.1 8520 g2736 i0 54.5 25.0975609756098 101 39 98.3 1 3 284 153 253 XP_042324725.1 cathepsin B isoform X1 [Sceloporus undulatus] diamond 7203 119 0.991596638655462 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Phrynosomatidae Sceloporus Sceloporus undulatus
11138445 11138445 PRJNA951412_P_NODE_2849_length_287_cov_1.084112_g2764_i0 PRJNA951412 2849 287 1.084112 3.11140144 Chordata 7711 Chordata Chordata 131 3.78e-33   NR XP_004602334.3 42254 g2764 i0 68.1 167.717770034843 94 30 98.3 0 4 285 460 553 XP_004602334.3 ATP-dependent translocase ABCB1 isoform X1 [Sorex araneus] diamond 48135 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex araneus
13688476 13688476 PRJNA951412_P_NODE_551_length_641_cov_4.605634_g467_i0 PRJNA951412 551 641 4.605634 29.52211394 Patagioenas fasciata monilis 372326 Chordata Chordata 186 2.2599999999999997e-56   NR OPJ73047.1 372326 g467 i0 68.6 13.0670826833073 121 38 56.6 0 124 486 38 158 OPJ73047.1 40S ribosomal protein S12 [Patagioenas fasciata monilis] diamond 8376 186 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Patagioenas Patagioenas fasciata
26803973 26803973 PRJNA951412_P_NODE_1501_length_366_cov_2.450512_g1416_i0 PRJNA951412 1501 366 2.450512 8.96887392 Branchiostoma floridae 7739 Chordata Chordata 82 1.97e-15   NR XP_035671522.1 7739 g1416 i0 39.8 1.90163934426229 128 71 100 5 1 366 33 160 XP_035671522.1 subtilisin-like serine protease Rho m 2.0101 [Branchiostoma floridae] diamond 696 82 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27088925 27088925 PRJNA951412_P_NODE_5122_length_249_cov_2.630682_g5037_i0 PRJNA951412 5122 249 2.630682 6.55039818 Myxine glutinosa 7769 Chordata Chordata 89 1.61e-18   NR XP_067977168.1 7769 g5037 i0 50 11.6144578313253 82 41 98.8 0 247 2 215 296 XP_067977168.1 nucleoredoxin isoform X1 [Myxine glutinosa] diamond 2892 89 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
28952219 28952219 PRJNA951412_P_NODE_7388_length_243_cov_0.917647_g7303_i0 PRJNA951412 7388 243 0.917647 2.22988221 Oikopleura dioica 34765 Chordata Chordata 57.8 1.9e-7   NR CBY14923.1 34765 g7303 i0 59 0.962962962962963 39 16 48.1 0 9 125 433 471 CBY14923.1 unnamed protein product [Oikopleura dioica] diamond 234 58.2 0.993127147766323 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
29621122 29621122 PRJNA951412_P_NODE_2450_length_303_cov_2.017391_g2365_i0 PRJNA951412 2450 303 2.017391 6.11269473 Testudines 8459 Chordata Chordata 103 2.98e-23   NR CAM2110467.1 8467 g2365 i0 52 8.88118811881188 100 47 98 1 299 3 419 518 CAM2110467.1 unnamed protein product [Caretta caretta] diamond 2691 103 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
30057060 30057060 PRJNA951412_P_NODE_3531_length_265_cov_1.229167_g3446_i0 PRJNA951412 3531 265 1.229167 3.25729255 Xenopus laevis 8355 Chordata Chordata 76.3 7.67e-14   NR NP_001080042.1 8355 g3446 i0 44 4.72075471698113 84 46 95.1 1 12 263 156 238 NP_001080042.1 transducin (beta)-like 3 L homeolog [Xenopus laevis] diamond 1251 76.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
30847088 30847088 PRJNA951412_P_NODE_714_length_542_cov_2.547974_g629_i0 PRJNA951412 714 542 2.547974 13.81001908 Hypanus sabinus 79690 Chordata Chordata 72.8 2.61e-11   NR XP_059816063.1 79690 g629 i0 37.6 1.20664206642066 109 62 57.6 2 461 150 110 217 XP_059816063.1 uncharacterized protein LOC132387718 [Hypanus sabinus] diamond 654 72.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
31264456 31264456 PRJNA951412_P_NODE_1955_length_331_cov_1.426357_g1870_i0 PRJNA951412 1955 331 1.426357 4.72124167 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 155 3.8399999999999997e-42   NR KAI6077199.1 8832 g1870 i0 78.3 78.9425981873112 92 20 83.4 0 54 329 2 93 KAI6077199.1 Protein transport protein Sec61 subunit alpha [Aix galericulata] diamond 26130 155 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Aix Aix galericulata
31352847 31352847 PRJNA951412_P_NODE_3056_length_280_cov_1.352657_g2971_i0 PRJNA951412 3056 280 1.352657 3.7874396 Staurois parvus 386267 Chordata Chordata 50.8 5.42e-5   NR CAI9536211.1 386267 g2971 i0 51.8 1.11428571428571 56 20 52.5 3 48 194 170 225 CAI9536211.1 unnamed protein product [Staurois parvus] diamond 312 50.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;