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contig_metadata

35 rows where analysis = "diamond", bioproject = "PRJNA951412" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 35 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA951412 · 35 ✖

analysis 1

  • diamond · 35 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4763192 4763192 PRJNA951412_P_NODE_5864_length_247_cov_0.896552_g5779_i0 PRJNA951412 5864 247 0.896552 2.21448344 Sanguibacter 60919 Bacteria Bacteria 163 1.3099999999999998e-47   NR WP_056130002.1 60919 g5779 i0 93.9 0.995951417004049 82 5 99.6 0 247 2 191 272 WP_056130002.1 MULTISPECIES: tyrosine recombinase XerC [Sanguibacter] diamond 246 163 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Sanguibacteraceae Sanguibacter  
7312814 7312814 PRJNA951412_P_NODE_546_length_646_cov_4.560209_g462_i0 PRJNA951412 546 646 4.560209 29.45895014 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 223 3.62e-71   NR MCP3885490.1 2021380 g462 i0 72.5 0.691950464396285 149 41 69.2 0 37 483 3 151 MCP3885490.1 translation initiation factor IF-5A [Propionibacteriaceae bacterium] diamond 447 223 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
8587824 8587824 PRJNA951412_P_NODE_7527_length_243_cov_0.911765_g7442_i0 PRJNA951412 7527 243 0.911765 2.21558895 Corynebacterium kroppenstedtii 161879 Bacteria Bacteria 172 1.0999999999999999e-48   NR WP_303734950.1 161879 g7442 i0 100 2 81 0 100 0 243 1 417 497 WP_303734950.1 AMP-binding protein [Corynebacterium kroppenstedtii] diamond 486 172 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium kroppenstedtii
13688502 13688502 PRJNA951412_P_NODE_7511_length_243_cov_0.911765_g7426_i0 PRJNA951412 7511 243 0.911765 2.21558895 Gordonia sp. 852 1834085 Bacteria Bacteria 158 2.9e-45   NR WP_064864188.1 1834085 g7426 i0 100 0.987654320987654 80 0 98.8 0 3 242 147 226 WP_064864188.1 amidohydrolase family protein [Gordonia sp. 852002-10350_SCH5691597] diamond 240 158 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. 852002-10350_SCH5691597
26899117 26899117 PRJNA951412_P_NODE_7741_length_242_cov_0.923077_g7656_i0 PRJNA951412 7741 242 0.923077 2.23384634 Gordonia paraffinivorans 175628 Bacteria Bacteria 103 6.29e-26   NR WP_131733275.1 175628 g7656 i0 100 0.59504132231405 48 0 59.5 0 2 145 117 164 WP_131733275.1 nucleoside deaminase [Gordonia paraffinivorans] diamond 144 103 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia paraffinivorans
26962156 26962156 PRJNA951412_P_NODE_6122_length_247_cov_0.879310_g6037_i0 PRJNA951412 6122 247 0.87931 2.1718957 Gulosibacter sediminis 1729695 Bacteria Bacteria 79 1.62e-15   NR WP_249387877.1 1729695 g6037 i0 78.7 0.57085020242915 47 10 57.1 0 2 142 208 254 WP_249387877.1 DNA repair protein RecO [Gulosibacter sediminis] diamond 141 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gulosibacter Gulosibacter sediminis
27095323 27095323 PRJNA951412_P_NODE_5782_length_248_cov_0.862857_g5697_i0 PRJNA951412 5782 248 0.862857 2.13988536 PVC group 1783257 Bacteria Bacteria 92 5.8e-20   NR WP_030739833.1 1463898 g5697 i0 51.2 17.5403225806452 82 39 99.2 1 3 248 67 147 WP_030739833.1 alcohol dehydrogenase catalytic domain-containing protein [Streptomyces sp. NRRL S-31] diamond 4350 92 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NRRL S-31
27151582 27151582 PRJNA951412_P_NODE_7022_length_244_cov_0.912281_g6937_i0 PRJNA951412 7022 244 0.912281 2.22596564 Microlunatus phosphovorus 29405 Bacteria Bacteria 144 4.09e-40   NR WP_013861008.1 29405 g6937 i0 84 0.995901639344262 81 13 99.6 0 1 243 100 180 WP_013861008.1 three-Cys-motif partner protein TcmP [Microlunatus phosphovorus] diamond 243 144 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus phosphovorus
27373566 27373566 PRJNA951412_P_NODE_4963_length_250_cov_0.875706_g4878_i0 PRJNA951412 4963 250 0.875706 2.189265 Aquiluna sp. 2053504 Bacteria Bacteria 142 1.25e-40   NR MDP4756602.1 2053504 g4878 i0 77.1 1.992 83 19 99.6 0 2 250 39 121 MDP4756602.1 glycogen debranching enzyme [Aquiluna sp.] diamond 498 142 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Aquiluna sp.
27405038 27405038 PRJNA951412_P_NODE_2003_length_328_cov_0.835294_g1918_i0 PRJNA951412 2003 328 0.835294 2.73976432 Mycobacterium tuberculosis 1773 Bacteria Bacteria 50.4 1.11e-5   NR WP_210068995.1 1773 g1918 i0 71 0.283536585365854 31 9 28.4 0 133 225 32 62 WP_210068995.1 hypothetical protein, partial [Mycobacterium tuberculosis] diamond 93 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium tuberculosis
27594434 27594434 PRJNA951412_P_NODE_6944_length_244_cov_1.362573_g6859_i0 PRJNA951412 6944 244 1.362573 3.32467812 Kocuria rhizophila 72000 Bacteria Bacteria 67.4 9.38e-13   NR PZP22957.1 72000 g6859 i0 93.5 0.381147540983607 31 2 38.1 0 91 183 1 31 PZP22957.1 MAG: hypothetical protein DI613_18115 [Kocuria rhizophila] diamond 93 67.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Kocuria Kocuria rhizophila
28137803 28137803 PRJNA951412_P_NODE_5025_length_250_cov_0.875706_g4940_i0 PRJNA951412 5025 250 0.875706 2.189265 Bacteria 2 Bacteria Bacteria 56.2 4.42e-7   NR GAA1148512.1 284570 g4940 i0 41 1.776 78 37 88.8 2 225 4 6 78 GAA1148512.1 hypothetical protein GCM10009651_36460 [Microbacterium natoriense] diamond 444 56.6 0.992932862190813 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium natoriense
28383642 28383642 PRJNA951412_P_NODE_4246_length_252_cov_0.871508_g4161_i0 PRJNA951412 4246 252 0.871508 2.19620016 Jiangellaceae bacterium 2768363 Bacteria Bacteria 80.1 2.94e-15   NR HLR97857.1 2768363 g4161 i0 50.6 0.964285714285714 81 36 96.4 2 244 2 1211 1287 HLR97857.1 hypothetical protein [Jiangellaceae bacterium] diamond 243 80.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Jiangellales Jiangellaceae   Jiangellaceae bacterium
28699575 28699575 PRJNA951412_P_NODE_4727_length_251_cov_0.865169_g4642_i0 PRJNA951412 4727 251 0.865169 2.17157419 Actinomyces sp. oral taxon 448 712124 Bacteria Bacteria 148 3.86e-40   NR WP_291455803.1 712124 g4642 i0 98.7 0.896414342629482 75 1 89.6 0 26 250 1 75 WP_291455803.1 alanine/glycine:cation symporter family protein [Actinomyces sp. oral taxon 448] diamond 225 148 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces sp. oral taxon 448
28983840 28983840 PRJNA951412_P_NODE_4568_length_251_cov_0.876404_g4483_i0 PRJNA951412 4568 251 0.876404 2.19977404 Mycobacteriaceae bacterium 2448780 Bacteria Bacteria 102 1.45e-24   NR MBV9090024.1 2448780 g4483 i0 59.3 1.92430278884462 81 32 95.6 1 4 243 83 163 MBV9090024.1 class I SAM-dependent methyltransferase [Mycobacteriaceae bacterium] diamond 483 102 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae   Mycobacteriaceae bacterium
29330823 29330823 PRJNA951412_P_NODE_4269_length_252_cov_0.871508_g4184_i0 PRJNA951412 4269 252 0.871508 2.19620016 Brachybacterium squillarum 661979 Bacteria Bacteria 106 1.07e-25   NR WP_010533070.1 661979 g4184 i0 98 0.595238095238095 50 1 59.5 0 2 151 258 307 WP_010533070.1 tRNA glutamyl-Q(34) synthetase GluQRS [Brachybacterium squillarum] diamond 150 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium squillarum
29583151 29583151 PRJNA951412_P_NODE_4810_length_250_cov_0.881356_g4725_i0 PRJNA951412 4810 250 0.881356 2.20339 Brachybacterium endophyticum 2182385 Bacteria Bacteria 60.8 1.47e-8   NR WP_109274528.1 2182385 g4725 i0 83.3 0.36 30 5 36 0 248 159 314 343 WP_109274528.1 LLM class flavin-dependent oxidoreductase [Brachybacterium endophyticum] diamond 90 60.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermabacteraceae Brachybacterium Brachybacterium endophyticum
29835991 29835991 PRJNA951412_P_NODE_2251_length_313_cov_1.283333_g2166_i0 PRJNA951412 2251 313 1.283333 4.01683229 Kribbia dieselivorans 331526 Bacteria Bacteria 154 1.42e-43   NR WP_245627233.1 331526 g2166 i0 70.9 0.987220447284345 103 30 98.7 0 3 311 51 153 WP_245627233.1 SMP-30/gluconolactonase/LRE family protein [Kribbia dieselivorans] diamond 309 154 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Kribbia Kribbia dieselivorans
29867679 29867679 PRJNA951412_P_NODE_2271_length_312_cov_1.205021_g2186_i0 PRJNA951412 2271 312 1.205021 3.75966552 Lawsonella 1847725 Bacteria Bacteria 202 2.3600000000000003e-58   NR WP_290598468.1 1847725 g2186 i0 100 0.990384615384615 103 0 99 0 2 310 108 210 WP_290598468.1 MULTISPECIES: glycoside hydrolase family 65 protein [Lawsonella] diamond 309 202 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella  
29874268 29874268 PRJNA951412_P_NODE_5511_length_248_cov_0.891429_g5426_i0 PRJNA951412 5511 248 0.891429 2.21074392 Actinomyces 1654 Bacteria Bacteria 160 2.9299999999999997e-45   NR WP_314742691.1 249061 g5426 i0 98.8 2.9758064516129 82 1 99.2 0 246 1 358 439 WP_314742691.1 oligopeptide:H+ symporter, partial [uncultured Actinomyces sp.] diamond 738 160 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces uncultured Actinomyces sp.
30057063 30057063 PRJNA951412_P_NODE_7751_length_242_cov_0.923077_g7666_i0 PRJNA951412 7751 242 0.923077 2.23384634 Kytococcus sedentarius 1276 Bacteria Bacteria 142 1.57e-41   NR WP_406918897.1 1276 g7666 i0 86.3 0.991735537190083 80 11 99.2 0 2 241 39 118 WP_406918897.1 hypothetical protein [Kytococcus sedentarius] diamond 240 142 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Kytococcaceae Kytococcus Kytococcus sedentarius
30664044 30664044 PRJNA951412_P_NODE_5913_length_247_cov_0.896552_g5828_i0 PRJNA951412 5913 247 0.896552 2.21448344 Gordonia 2053 Bacteria Bacteria 107 1.14e-26   NR WP_251721517.1 36823 g5828 i0 95.3 2.33198380566802 64 3 77.7 0 2 193 39 102 WP_251721517.1 hypothetical protein [Gordonia sputi] diamond 576 107 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sputi
30720612 30720612 PRJNA951412_P_NODE_7174_length_244_cov_0.906433_g7089_i0 PRJNA951412 7174 244 0.906433 2.21169652 Microbacterium aurum 36805 Bacteria Bacteria 147 3.5e-39   NR WP_281652073.1 36805 g7089 i0 100 0.983606557377049 80 0 98.4 0 3 242 118 197 WP_281652073.1 heavy metal translocating P-type ATPase [Microbacterium aurum] diamond 240 147 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium aurum
30910427 30910427 PRJNA951412_P_NODE_5774_length_248_cov_0.868571_g5689_i0 PRJNA951412 5774 248 0.868571 2.15405608 Gulosibacter sediminis 1729695 Bacteria Bacteria 128 8.58e-35   NR WP_282825582.1 1729695 g5689 i0 91 0.810483870967742 67 6 81 0 2 202 164 230 WP_282825582.1 lysophospholipid acyltransferase family protein [Gulosibacter sediminis] diamond 201 128 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gulosibacter Gulosibacter sediminis
31068438 31068438 PRJNA951412_P_NODE_4275_length_252_cov_0.871508_g4190_i0 PRJNA951412 4275 252 0.871508 2.19620016 Microbacterium marinilacus 415209 Bacteria Bacteria 97.1 8.79e-22   NR WP_221856764.1 415209 g4190 i0 68.2 1.57142857142857 66 21 78.6 0 198 1 190 255 WP_221856764.1 GTP-binding protein [Microbacterium marinilacus] diamond 396 97.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium marinilacus
31074869 31074869 PRJNA951412_P_NODE_6175_length_246_cov_1.537572_g6090_i0 PRJNA951412 6175 246 1.537572 3.78242712 Actinomycetes 1760 Bacteria Bacteria 54.3 3.45e-7   NR WP_042621202.1 349751 g6090 i0 35.1 1.74390243902439 74 44 86.6 2 214 2 5 77 WP_042621202.1 hypothetical protein [Corynebacterium marinum] diamond 429 54.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium marinum
31257853 31257853 PRJNA951412_P_NODE_5635_length_248_cov_0.885714_g5550_i0 PRJNA951412 5635 248 0.885714 2.19657072 Aquiluna sp. 2053504 Bacteria Bacteria 88.6 2.34e-20   NR MDP4756715.1 2053504 g5550 i0 88.2 0.616935483870968 51 6 61.7 0 155 3 2 52 MDP4756715.1 DUF3566 domain-containing protein [Aquiluna sp.] diamond 153 88.6 1 Bacteria Luna-1 subcluster Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Aquiluna Aquiluna sp.
31384531 31384531 PRJNA951412_P_NODE_676_length_555_cov_2.419087_g591_i0 PRJNA951412 676 555 2.419087 13.42593285 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 127 2.39e-30   NR MCP3885345.1 2021380 g591 i0 44.6 0.848648648648649 157 85 84.9 2 2 472 872 1026 MCP3885345.1 hypothetical protein [Propionibacteriaceae bacterium] diamond 471 127 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
31542637 31542637 PRJNA951412_P_NODE_6276_length_246_cov_0.901734_g6191_i0 PRJNA951412 6276 246 0.901734 2.21826564 Lawsonella clevelandensis 1528099 Bacteria Bacteria 144 1.9299999999999994e-42   NR WP_306559112.1 1528099 g6191 i0 100 0.914634146341463 75 0 91.5 0 21 245 2 76 WP_306559112.1 FluC/FEX family fluoride channel [Lawsonella clevelandensis] diamond 225 144 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
31827041 31827041 PRJNA951412_P_NODE_7117_length_244_cov_0.906433_g7032_i0 PRJNA951412 7117 244 0.906433 2.21169652 Paenarthrobacter sp. NPDC 1931993 Bacteria Bacteria 75.5 1.53e-14   NR WP_364160951.1 3155065 g7032 i0 49.4 3.86065573770492 79 32 97.1 2 240 4 93 163 WP_364160951.1 FMN-binding negative transcriptional regulator [Paenarthrobacter sp. NPDC089322] diamond 942 75.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Paenarthrobacter Paenarthrobacter sp. NPDC089322
31890433 31890433 PRJNA951412_P_NODE_4517_length_251_cov_0.876404_g4432_i0 PRJNA951412 4517 251 0.876404 2.19977404 Gulosibacter sediminis 1729695 Bacteria Bacteria 135 7.49e-35   NR WP_282827154.1 1729695 g4432 i0 83.1 0.99203187250996006 83 14 99.2 0 249 1 903 985 WP_282827154.1 MobF family relaxase [Gulosibacter sediminis] diamond 249 135 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Gulosibacter Gulosibacter sediminis
31985317 31985317 PRJNA951412_P_NODE_7978_length_242_cov_0.911243_g7893_i0 PRJNA951412 7978 242 0.911243 2.20520806 uncultured Lawsonella sp. 1847727 Bacteria Bacteria 119 1.9099999999999997e-30   NR WP_296238085.1 1847727 g7893 i0 86.3 0.991735537190083 80 11 99.2 0 3 242 26 105 WP_296238085.1 phosphate ABC transporter permease subunit PstC [uncultured Lawsonella sp.] diamond 240 119 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella uncultured Lawsonella sp.
32617946 32617946 PRJNA951412_P_NODE_6300_length_246_cov_0.901734_g6215_i0 PRJNA951412 6300 246 0.901734 2.21826564 Aeromicrobium sp. 1871063 Bacteria Bacteria 75.5 2.32e-14   NR WP_415004745.1 1871063 g6215 i0 51.5 5.26829268292683 68 33 82.9 0 239 36 157 224 WP_415004745.1 6-phosphogluconolactonase [Aeromicrobium sp.] diamond 1296 75.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp.
32649122 32649122 PRJNA951412_P_NODE_6660_length_245_cov_0.906977_g6575_i0 PRJNA951412 6660 245 0.906977 2.22209365 Streptomyces sp. ET3-23 2885643 Bacteria Bacteria 56.6 2.96e-7   NR WP_227727842.1 2885643 g6575 i0 45.8 1.92244897959184 83 38 98 2 241 2 108 186 WP_227727842.1 SDR family oxidoreductase [Streptomyces sp. ET3-23] diamond 471 56.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. ET3-23
32712405 32712405 PRJNA951412_P_NODE_6700_length_245_cov_0.906977_g6615_i0 PRJNA951412 6700 245 0.906977 2.22209365 Gordonia sp. VNK1 3156618 Bacteria Bacteria 156 4.7e-44   NR WP_348807808.1 3156618 g6615 i0 98.8 0.991836734693878 81 1 99.2 0 1 243 318 398 WP_348807808.1 glycosyltransferase family 4 protein [Gordonia sp. VNK1] diamond 243 156 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia oleivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;