RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA951412" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA951412 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3485443 3485443 PRJNA951412_P_NODE_1403_length_377_cov_2.029605_g1318_i0 PRJNA951412 1403 377 2.029605 7.65161085 root 1 Root_unresolved Root_unresolved 142 2.11e-36   NR KAJ9517333.1 44745 g1318 i0 66.1 18.7320954907162 124 42 98.7 0 1 372 1062 1185 KAJ9517333.1 hypothetical protein QJQ45_016698 [Haematococcus lacustris] diamond 7062 143 0.993006993006993 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
14962636 14962636 PRJNA951412_P_NODE_272_length_949_cov_3.033105_g203_i0 PRJNA951412 272 949 3.033105 28.78416645 Chlorophyta 3041 Plants Plants 361 7.209999999999997e-110   NR KAL4858421.1 3077 g203 i0 65.9 11.2824025289779 258 88 81.6 0 12 785 81 338 KAL4858421.1 40S ribosomal protein S4 [Chlorella vulgaris] diamond 10707 364 0.991758241758242 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella vulgaris
27569226 27569226 PRJNA951412_P_NODE_4364_length_252_cov_0.865922_g4279_i0 PRJNA951412 4364 252 0.865922 2.18212344 Chlamydomonadales 3042 Plants Plants 121 4.86e-30   NR XP_042926294.1 3055 g4279 i0 69.9 2.94047619047619 83 25 98.8 0 250 2 3 85 XP_042926294.1 uncharacterized protein CHLRE_03g189950v5 [Chlamydomonas reinhardtii] diamond 741 122 0.991803278688525 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
27721070 27721070 PRJNA951412_P_NODE_1064_length_436_cov_1.283747_g979_i0 PRJNA951412 1064 436 1.283747 5.59713692 Bryopsis sp. KO-2 3115439 Plants Plants 169 1.6999999999999998e-48   NR GMH37549.1 3041901 g979 i0 52.4 0.997706422018349 145 69 99.8 0 435 1 75 219 GMH37549.1 hypothetical protein BSKO_05422 [Bryopsis sp. KO-2023] diamond 435 169 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023
27752371 27752371 PRJNA951412_P_NODE_4544_length_251_cov_0.876404_g4459_i0 PRJNA951412 4544 251 0.876404 2.19977404 Scenedesmus sp. NREL 46B-D3 2650976 Plants Plants 51.6 4.25e-6   NR KAF6266637.1 2650976 g4459 i0 40 0.836653386454183 70 42 83.7 0 35 244 13 82 KAF6266637.1 transmembrane proteins 14C-domain-containing protein [Scenedesmus sp. NREL 46B-D3] diamond 210 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Scenedesmus Scenedesmus sp. NREL 46B-D3
28067890 28067890 PRJNA951412_P_NODE_2585_length_297_cov_1.745536_g2500_i0 PRJNA951412 2585 297 1.745536 5.18424192 Pedinophyceae sp. YPF-7 765719 Plants Plants 184 2.56e-53   NR CAG9464639.1 765719 g2500 i0 93.9 31.6767676767677 98 6 99 0 2 295 372 469 CAG9464639.1 unnamed protein product [Pedinophyceae sp. YPF-701] diamond 9408 184 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Pedinophyceae       Pedinophyceae sp. YPF-701
28793957 28793957 PRJNA951412_P_NODE_3987_length_253_cov_2.222222_g3902_i0 PRJNA951412 3987 253 2.222222 5.62222166 Prototheca wickerhamii 3111 Plants Plants 81.6 6.09e-17   NR KAK2076667.1 3111 g3902 i0 63.3 0.711462450592885 60 22 71.1 0 252 73 124 183 KAK2076667.1 hypothetical protein QBZ16_005427 [Prototheca wickerhamii] diamond 180 81.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
29463313 29463313 PRJNA951412_P_NODE_2330_length_309_cov_1.313559_g2245_i0 PRJNA951412 2330 309 1.313559 4.05889731 Eukaryota 2759 Plants Plants 156 4.7e-45   NR KAK9820033.1 41462 g2245 i0 73.7 26.7087378640777 99 26 96.1 0 11 307 1 99 KAK9820033.1 hypothetical protein WJX72_005304 [[Myrmecia] bisecta] diamond 8253 156 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
31454355 31454355 PRJNA951412_P_NODE_2836_length_287_cov_1.439252_g2751_i0 PRJNA951412 2836 287 1.439252 4.13065324 Chlorellaceae 35461 Plants Plants 124 7.09e-31   NR XP_005845202.1 554065 g2751 i0 57.4 3.93031358885017 94 40 98.3 0 286 5 382 475 XP_005845202.1 hypothetical protein CHLNCDRAFT_137433 [Chlorella variabilis] diamond 1128 124 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;