RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA951412" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 4 ✖

bioproject 1

  • PRJNA951412 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16237634 16237634 PRJNA951412_P_NODE_4173_length_252_cov_1.731844_g4088_i0 PRJNA951412 4173 252 1.731844 4.36424688 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 139 6.26e-36   NR XP_013756049.1 461836 g4088 i0 72.3 0.988095238095238 83 23 98.8 0 2 250 846 928 XP_013756049.1 NAD-specific glutamate dehydrogenase [Thecamonas trahens ATCC 50062] diamond 249 139 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
29772735 29772735 PRJNA951412_P_NODE_1791_length_341_cov_1.152985_g1706_i0 PRJNA951412 1791 341 1.152985 3.93167885 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 55.5 1.33e-7   NR XP_013754142.1 461836 g1706 i0 47.7 0.387096774193548 44 23 38.7 0 26 157 11 54 XP_013754142.1 uncharacterized protein AMSG_09583 [Thecamonas trahens ATCC 50062] diamond 132 55.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30032250 30032250 PRJNA951412_P_NODE_3191_length_275_cov_1.539604_g3106_i0 PRJNA951412 3191 275 1.539604 4.233911 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 133 1.77e-35   NR XP_013760592.1 461836 g3106 i0 71.7 1.96363636363636 92 24 98.2 1 272 3 43 134 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 540 134 0.992537313432836 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31700720 31700720 PRJNA951412_P_NODE_4337_length_252_cov_0.865922_g4252_i0 PRJNA951412 4337 252 0.865922 2.18212344 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 43.5 0.0226   NR XP_013754157.1 461836 g4252 i0 39.3 0.666666666666667 56 32 64.3 1 2 163 632 687 XP_013754157.1 uncharacterized protein AMSG_09601 [Thecamonas trahens ATCC 50062] diamond 168 43.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;