RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA951388" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA951388 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27095322 27095322 PRJNA951388_S_NODE_962_length_660_cov_20.367973_g847_i0 PRJNA951388 962 660 20.367973 134.4286218 Pseudomonadati 3379134 Bacteria Bacteria 204 2.0099999999999997e-61   NR MBN1402941.1 2026772 g847 i0 55.1 13.6818181818182 198 85 90 3 1 594 123 316 MBN1402941.1 transaldolase [Opitutales bacterium] diamond 9030 206 0.990291262135922 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
28636483 28636483 PRJNA951388_S_NODE_10747_length_250_cov_4.785311_g10620_i0 PRJNA951388 10747 250 4.785311 11.9632775 Spartobacteria bacterium 2052183 Bacteria Bacteria 52.4 1.62e-5   NR NCC52901.1 2052183 g10620 i0 48.2 1.308 56 29 67.2 0 2 169 70 125 NCC52901.1 hypothetical protein [Spartobacteria bacterium] diamond 327 52.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria       Spartobacteria bacterium
32396854 32396854 PRJNA951388_S_NODE_4699_length_385_cov_4.137821_g4572_i0 PRJNA951388 4699 385 4.137821 15.93061085 Blastopirellula sediminis 2894196 Bacteria Bacteria 45.4 0.0173   NR WP_230222336.1 2894196 g4572 i0 30 0.545454545454545 70 47 53 1 60 263 280 349 WP_230222336.1 mannose-1-phosphate guanylyltransferase [Blastopirellula sediminis] diamond 210 45.4 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Blastopirellula Blastopirellula sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;