RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where analysis = "diamond", bioproject = "PRJNA950981" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA950981 · 33 ✖

analysis 1

  • diamond · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
933862 933862 PRJNA950981_P_NODE_17801_length_250_cov_0.881356_g17625_i0 PRJNA950981 17801 250 0.881356 2.20339 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 120 1.89e-29   NR XP_005998465.1 7897 g17625 i0 71.8 85.524 78 21 93.6 1 14 247 1152 1228 XP_005998465.1 bifunctional glutamate/proline--tRNA ligase [Latimeria chalumnae] diamond 21381 120 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
2209174 2209174 PRJNA950981_P_NODE_3362_length_523_cov_1.033333_g3188_i0 PRJNA950981 3362 523 1.033333 5.40433159 Metazoa 33208 Chordata Chordata 221 8.210000000000001e-70   NR XP_043923164.1 7888 g3188 i0 61.8 12.5449330783939 173 66 99.2 0 521 3 16 188 XP_043923164.1 60S ribosomal protein L7 [Protopterus annectens] diamond 6561 221 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
8586831 8586831 PRJNA950981_P_NODE_2067_length_654_cov_4.798623_g1894_i0 PRJNA950981 2067 654 4.798623 31.38299442 Metazoa 33208 Chordata Chordata 262 1.5e-85   NR XP_035658935.1 7739 g1894 i0 61.5 7.62844036697248 208 73 92.2 1 639 37 1 208 XP_035658935.1 40S ribosomal protein S8-like [Branchiostoma floridae] diamond 4989 262 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
8586839 8586839 PRJNA950981_P_NODE_3687_length_500_cov_8.878220_g3512_i0 PRJNA950981 3687 500 8.87822 44.3911 Pleurodeles waltl 8319 Chordata Chordata 167 1.01e-49   NR XP_069079766.1 8319 g3512 i0 62.3 10.944 151 54 90.6 2 486 34 1 148 XP_069079766.1 large ribosomal subunit protein uL15-like [Pleurodeles waltl] diamond 5472 168 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
11137467 11137467 PRJNA950981_P_NODE_15129_length_265_cov_1.218750_g14953_i0 PRJNA950981 15129 265 1.21875 3.2296875 Branchiostoma belcheri 7741 Chordata Chordata 153 1.35e-41   NR KAI8483770.1 7741 g14953 i0 84.1 7.96981132075472 88 14 99.6 0 2 265 428 515 KAI8483770.1 snoRNP complex protein nop56 [Branchiostoma belcheri] diamond 2112 153 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
12412935 12412935 PRJNA950981_P_NODE_13410_length_281_cov_1.500000_g13234_i0 PRJNA950981 13410 281 1.5 4.215 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.06e-33   NR XP_004225748.1 7719 g13234 i0 62.4 5.95729537366548 93 35 99.3 0 280 2 90 182 XP_004225748.1 60S ribosomal protein L7 [Ciona intestinalis] diamond 1674 127 0.992125984251969 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
20060492 20060492 PRJNA950981_P_NODE_1396_length_792_cov_2.983310_g1241_i0 PRJNA950981 1396 792 2.98331 23.6278152 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 264 4.439999999999999e-85   NR AAZ38987.1 8668 g1241 i0 59.6 55.4318181818182 223 78 83.3 3 131 790 10 223 AAZ38987.1 40S ribosomal protein S2, partial [Oxyuranus scutellatus] diamond 43902 266 0.992481203007519 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Oxyuranus Oxyuranus scutellatus
20060508 20060508 PRJNA950981_P_NODE_20076_length_245_cov_0.906977_g19900_i0 PRJNA950981 20076 245 0.906977 2.22209365 Amphibia 8292 Chordata Chordata 139 4.22e-36   NR XP_069084998.1 8319 g19900 i0 75.9 38.4 79 19 96.7 0 8 244 565 643 XP_069084998.1 cell surface hyaluronidase CEMIP2 [Pleurodeles waltl] diamond 9408 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
21335947 21335947 PRJNA950981_P_NODE_18757_length_248_cov_0.891429_g18581_i0 PRJNA950981 18757 248 0.891429 2.21074392 Metazoa 33208 Chordata Chordata 110 1.7699999999999999e-28   NR KAE8634441.1 8364 g18581 i0 65.8 39.1814516129032 79 27 95.6 0 8 244 29 107 KAE8634441.1 hypothetical protein XENTR_v10002308 [Xenopus tropicalis] diamond 9717 110 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
21664785 21664785 PRJNA950981_P_NODE_20897_length_243_cov_1.835294_g20721_i0 PRJNA950981 20897 243 1.835294 4.45976442 Opisthokonta 33154 Chordata Chordata 114 2.92e-27   NR CAH1264292.1 7740 g20721 i0 63.3 22.1481481481481 79 29 97.5 0 238 2 324 402 CAH1264292.1 RIOX1 [Branchiostoma lanceolatum] diamond 5382 115 0.991304347826087 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
22610811 22610811 PRJNA950981_P_NODE_10578_length_313_cov_2.375000_g10402_i0 PRJNA950981 10578 313 2.375 7.43375 Ovis aries 9940 Chordata Chordata 174 7.56e-53   NR NP_001159672.1 9940 g10402 i0 79.6 4.84025559105431 98 20 93.9 0 305 12 26 123 NP_001159672.1 peroxiredoxin-2 [Ovis aries] diamond 1515 174 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis aries
27120090 27120090 PRJNA950981_P_NODE_12422_length_291_cov_2.605505_g12246_i0 PRJNA950981 12422 291 2.605505 7.58201955 Erpetoichthys calabaricus 27687 Chordata Chordata 133 1.92e-35   NR XP_051791274.1 27687 g12246 i0 77.8 8.39175257731959 90 19 91.8 1 276 10 115 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2442 133 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27151544 27151544 PRJNA950981_P_NODE_20702_length_244_cov_0.912281_g20526_i0 PRJNA950981 20702 244 0.912281 2.22596564 Branchiostoma belcheri 7741 Chordata Chordata 84.3 8.3e-17   NR XP_019632896.1 7741 g20526 i0 41.3 2.93852459016393 80 47 98.4 0 5 244 420 499 XP_019632896.1 PREDICTED: nose resistant to fluoxetine protein 6-like [Branchiostoma belcheri] diamond 717 84.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
27214999 27214999 PRJNA950981_P_NODE_5402_length_419_cov_1.349711_g5226_i0 PRJNA950981 5402 419 1.349711 5.65528909 Catharus ustulatus 91951 Chordata Chordata 61.6 5.69e-9   NR XP_032911962.1 91951 g5226 i0 45 0.572792362768496 80 43 56.6 1 415 179 53 132 XP_032911962.1 cytochrome b-c1 complex subunit 7 [Catharus ustulatus] diamond 240 61.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Turdidae Catharus Catharus ustulatus
27752335 27752335 PRJNA950981_P_NODE_9104_length_334_cov_1.505747_g8928_i0 PRJNA950981 9104 334 1.505747 5.02919498 Echinops telfairi 9371 Chordata Chordata 56.6 1.44e-6   NR XP_045141418.1 9371 g8928 i0 34.9 5.73053892215569 109 60 89.8 2 323 24 592 698 XP_045141418.1 rho GTPase-activating protein 4 [Echinops telfairi] diamond 1914 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia   Tenrecidae Echinops Echinops telfairi
28036415 28036415 PRJNA950981_P_NODE_6625_length_381_cov_2.879870_g6449_i0 PRJNA950981 6625 381 2.87987 10.9723047 Lacerta agilis 80427 Chordata Chordata 124 1.02e-31   NR XP_032992740.1 80427 g6449 i0 49.6 2.97637795275591 127 60 98.4 3 379 5 176 300 XP_032992740.1 LOW QUALITY PROTEIN: cathepsin L1-like [Lacerta agilis] diamond 1134 124 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Lacerta Lacerta agilis
28263713 28263713 PRJNA950981_P_NODE_11406_length_303_cov_2.034783_g11230_i0 PRJNA950981 11406 303 2.034783 6.16539249 Anura 8342 Chordata Chordata 70.5 1.21e-12   NR KAG9483826.1 57060 g11230 i0 63 2.61386138613861 54 20 53.5 0 23 184 99 152 KAG9483826.1 hypothetical protein GDO78_009641 [Eleutherodactylus coqui] diamond 792 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
28509968 28509968 PRJNA950981_P_NODE_5187_length_427_cov_1.319209_g5011_i0 PRJNA950981 5187 427 1.319209 5.63302243 Ciona intestinalis 7719 Chordata Chordata 66.2 6.57e-10   NR XP_002126668.1 7719 g5011 i0 33.3 1.62997658079625 111 56 78 3 343 11 126 218 XP_002126668.1 putative mannose 6-phosphate receptor-like protein C530.09c [Ciona intestinalis] diamond 696 66.2 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
28674436 28674436 PRJNA950981_P_NODE_19627_length_246_cov_0.901734_g19451_i0 PRJNA950981 19627 246 0.901734 2.21826564 Metazoa 33208 Chordata Chordata 78.6 9.28e-15   NR CAH1273775.1 7740 g19451 i0 55.9 5.97560975609756 68 28 81.7 2 2 202 364 430 CAH1273775.1 NOTUM [Branchiostoma lanceolatum] diamond 1470 79 0.994936708860759 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
28857052 28857052 PRJNA950981_P_NODE_12828_length_287_cov_1.457944_g12652_i0 PRJNA950981 12828 287 1.457944 4.18429928 Branchiostoma lanceolatum 7740 Chordata Chordata 79.7 6.27e-15   NR CAH1233942.1 7740 g12652 i0 60.3 1.21254355400697 58 23 60.6 0 286 113 605 662 CAH1233942.1 SDS [Branchiostoma lanceolatum] diamond 348 79.7 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29015412 29015412 PRJNA950981_P_NODE_11688_length_300_cov_1.374449_g11512_i0 PRJNA950981 11688 300 1.374449 4.123347 Branchiostoma lanceolatum 7740 Chordata Chordata 124 5.84e-33   NR XP_066287101.1 7740 g11512 i0 62.5 3.88 96 34 96 1 290 3 31 124 XP_066287101.1 large ribosomal subunit protein uL6-like [Branchiostoma lanceolatum] diamond 1164 124 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma lanceolatum
29211293 29211293 PRJNA950981_P_NODE_15329_length_263_cov_1.305263_g15153_i0 PRJNA950981 15329 263 1.305263 3.43284169 root 1 Root_unresolved Root_unresolved 68.2 4.9e-11   NR XP_035671522.1 7739 g15153 i0 49.3 4.81368821292776 75 35 82.1 2 48 263 80 154 XP_035671522.1 subtilisin-like serine protease Rho m 2.0101 [Branchiostoma floridae] diamond 1266 68.6 0.994169096209913 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29305750 29305750 PRJNA950981_P_NODE_7509_length_362_cov_1.619377_g7333_i0 PRJNA950981 7509 362 1.619377 5.86214474 Metazoa 33208 Chordata Chordata 91.7 6.06e-20   NR NP_990156.2 9031 g7333 i0 41.2 54.853591160221 119 66 98.6 2 362 6 89 203 NP_990156.2 ubiquitin carboxyl-terminal hydrolase isozyme L3 [Gallus gallus] diamond 19857 92.4 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
29558313 29558313 PRJNA950981_P_NODE_20690_length_244_cov_0.912281_g20514_i0 PRJNA950981 20690 244 0.912281 2.22596564 Caudata 8293 Chordata Chordata 48.9 2.55e-4   NR XP_069476978.1 8296 g20514 i0 66.7 4.42622950819672 27 9 33.2 0 4 84 376 402 XP_069476978.1 THO complex subunit 1 isoform X1 [Ambystoma mexicanum] diamond 1080 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum
29614685 29614685 PRJNA950981_P_NODE_17250_length_251_cov_1.668539_g17074_i0 PRJNA950981 17250 251 1.668539 4.18803289 Polypterus senegalus 55291 Chordata Chordata 68.9 1.87e-11   NR KAG2460242.1 55291 g17074 i0 56.9 6.02390438247012 72 31 86.1 0 2 217 170 241 KAG2460242.1 TCB1 transposase, partial [Polypterus senegalus] diamond 1512 69.3 0.994227994227994 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30088695 30088695 PRJNA950981_P_NODE_5652_length_411_cov_0.928994_g5476_i0 PRJNA950981 5652 411 0.928994 3.81816534 Ciona intestinalis 7719 Chordata Chordata 155 6.07e-41   NR XP_026689406.1 7719 g5476 i0 55 9.08759124087591 140 58 99.3 4 3 410 336 474 XP_026689406.1 prolyl endopeptidase [Ciona intestinalis] diamond 3735 155 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
30342072 30342072 PRJNA950981_P_NODE_3732_length_498_cov_2.164706_g3557_i0 PRJNA950981 3732 498 2.164706 10.78023588 Erpornis zantholeuca 1112836 Chordata Chordata 163 1.95e-45   NR NXS89673.1 1112836 g3557 i0 53.7 6.8433734939759 164 76 98.8 0 4 495 6 169 NXS89673.1 CATD protein [Erpornis zantholeuca] diamond 3408 163 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Timaliidae Erpornis Erpornis zantholeuca
30562397 30562397 PRJNA950981_P_NODE_10553_length_314_cov_1.074689_g10377_i0 PRJNA950981 10553 314 1.074689 3.37452346 Engystomops pustulosus 76066 Chordata Chordata 47 2.94e-4   NR KAG8536220.1 76066 g10377 i0 67.9 0.802547770700637 28 9 26.8 0 109 26 43 70 KAG8536220.1 hypothetical protein GDO81_026873 [Engystomops pustulosus] diamond 252 47 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus
31074863 31074863 PRJNA950981_P_NODE_21895_length_239_cov_2.777108_g21719_i0 PRJNA950981 21895 239 2.777108 6.63728812 Opisthokonta 33154 Chordata Chordata 144 5.419999999999999e-38   NR CAM2108143.1 8467 g21719 i0 89.9 240.878661087866 79 8 99.2 0 1 237 392 470 CAM2108143.1 unnamed protein product [Caretta caretta] diamond 57570 145 0.993103448275862 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Caretta Caretta caretta
31257817 31257817 PRJNA950981_P_NODE_20375_length_245_cov_0.906977_g20199_i0 PRJNA950981 20375 245 0.906977 2.22209365 Polypterus senegalus 55291 Chordata Chordata 65.9 2.16e-10   NR KAG2455383.1 55291 g20199 i0 48.6 2.91428571428571 72 37 88.2 0 2 217 236 307 KAG2455383.1 TC1A transposase, partial [Polypterus senegalus] diamond 714 65.9 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31637305 31637305 PRJNA950981_P_NODE_11456_length_303_cov_1.326087_g11280_i0 PRJNA950981 11456 303 1.326087 4.01804361 Ascaphus truei 8439 Chordata Chordata 74.3 6.16e-13   NR MEE6478408.1 8439 g11280 i0 46.1 4.03960396039604 102 53 100 2 1 303 106 206 MEE6478408.1 hypothetical protein [Ascaphus truei] diamond 1224 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ascaphidae Ascaphus Ascaphus truei
32150237 32150237 PRJNA950981_P_NODE_11078_length_307_cov_1.333333_g10902_i0 PRJNA950981 11078 307 1.333333 4.09333231 root 1 Root_unresolved Root_unresolved 150 4.29e-41   NR CAG5089533.1 34765 g10902 i0 69.3 5.92182410423453 101 31 98.7 0 5 307 155 255 CAG5089533.1 Oidioi.mRNA.OKI2018_I69.PAR.g12251.t1.cds [Oikopleura dioica] diamond 1818 150 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura dioica
32245411 32245411 PRJNA950981_P_NODE_6058_length_398_cov_2.513846_g5882_i0 PRJNA950981 6058 398 2.513846 10.00510708 Chordata 7711 Chordata Chordata 144 5.09e-40   NR XP_004476556.2 9361 g5882 i0 62.7 50.1633165829146 118 44 88.9 0 397 44 92 209 XP_004476556.2 transcription factor BTF3 homolog 4 [Dasypus novemcinctus] diamond 19965 144 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Cingulata Dasypodidae Dasypus Dasypus novemcinctus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;