RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27214878 27214878 PRJNA946307_P_NODE_28502_length_242_cov_4.217617_g27628_i0 PRJNA946307 28502 242 4.217617 10.20663314 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 69.3 1.57e-11   NR XP_002680719.1 5762 g27628 i0 58 1.00413223140496 81 15 84.3 3 37 240 86 160 XP_002680719.1 uncharacterized protein NAEGRDRAFT_63873 [Naegleria gruberi] diamond 243 69.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30088595 30088595 PRJNA946307_P_NODE_48732_length_210_cov_3.751553_g47858_i0 PRJNA946307 48732 210 3.751553 7.8782613 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 72.4 8.45e-13   NR XP_002676483.1 5762 g47858 i0 93.8 0.457142857142857 32 2 45.7 0 113 208 1798 1829 XP_002676483.1 uncharacterized protein NAEGRDRAFT_80021 [Naegleria gruberi] diamond 96 72.4 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30815271 30815271 PRJNA946307_P_NODE_148734_length_165_cov_1.465517_g147860_i0 PRJNA946307 148734 165 1.465517 2.41810305 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 64.7 2.38e-10   NR XP_002669431.1 5762 g147860 i0 64.8 0.981818181818182 54 15 90.9 1 150 1 124 177 XP_002669431.1 uncharacterized protein NAEGRDRAFT_82165 [Naegleria gruberi] diamond 162 64.7 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;