RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26937068 26937068 PRJNA946307_P_NODE_39662_length_213_cov_2.810976_g38788_i0 PRJNA946307 39662 213 2.810976 5.98737888 Metazoa 33208 Echinodermata other_Eukaryota 50.1 6.63e-5   NR XP_033641107.1 7604 g38788 i0 67.7 1.85915492957746 31 9 42.3 1 114 203 1100 1130 XP_033641107.1 sortilin-related receptor-like isoform X1 [Asterias rubens] diamond 396 50.1 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Forcipulatida Asteriidae Asterias Asterias rubens
27310071 27310071 PRJNA946307_P_NODE_132883_length_169_cov_3.175000_g132009_i0 PRJNA946307 132883 169 3.175 5.36575 Patiria miniata 46514 Echinodermata other_Eukaryota 83.2 6.3e-17   NR XP_038065735.1 46514 g132009 i0 66.7 7.52662721893491 54 18 95.9 0 7 168 190 243 XP_038065735.1 glycogen synthase kinase-3 beta-like isoform X2 [Patiria miniata] diamond 1272 83.2 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27467943 27467943 PRJNA946307_P_NODE_139823_length_167_cov_1.694915_g138949_i0 PRJNA946307 139823 167 1.694915 2.83050805 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 39.7 0.0341   NR KAJ8021769.1 206669 g138949 i0 40.6 0.574850299401198 32 19 57.5 0 13 108 15 46 KAJ8021769.1 hypothetical protein HOLleu_39061 [Holothuria leucospilota] diamond 96 39.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;