RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26835669 26835669 PRJNA946307_P_NODE_156461_length_163_cov_1.710526_g155587_i0 PRJNA946307 156461 163 1.710526 2.78815738 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 57.4 6.09e-8   NR XP_004338033.1 1257118 g155587 i0 100 0.441717791411043 24 0 44.2 0 149 78 63 86 XP_004338033.1 uncharacterized protein ACA1_223060 [Acanthamoeba castellanii str. Neff] diamond 72 57.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28099196 28099196 PRJNA946307_P_NODE_111685_length_179_cov_1.484615_g110811_i0 PRJNA946307 111685 179 1.484615 2.65746085 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.6 1.16e-5   NR XP_004353236.1 1257118 g110811 i0 50.9 0.888268156424581 53 26 88.8 0 17 175 170 222 XP_004353236.1 uncharacterized protein ACA1_073520 [Acanthamoeba castellanii str. Neff] diamond 159 51.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28099305 28099305 PRJNA946307_P_NODE_95065_length_186_cov_2.708029_g94191_i0 PRJNA946307 95065 186 2.708029 5.03693394 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.2 0.00107   NR XP_004339518.1 1257118 g94191 i0 50.9 0.919354838709677 57 27 90.3 1 171 4 214 270 XP_004339518.1 aspartate-tRNA ligase [Acanthamoeba castellanii str. Neff] diamond 171 46.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29867504 29867504 PRJNA946307_P_NODE_16831_length_313_cov_6.818182_g15960_i0 PRJNA946307 16831 313 6.818182 21.34090966 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 90.5 1.54e-18   NR XP_004335984.1 1257118 g15960 i0 50 0.920127795527157 96 36 90.1 2 300 19 1709 1794 XP_004335984.1 ubiquitin domain containing protein [Acanthamoeba castellanii str. Neff] diamond 288 90.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32648979 32648979 PRJNA946307_P_NODE_64900_length_200_cov_3.668874_g64026_i0 PRJNA946307 64900 200 3.668874 7.337748 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.8 2.96e-5   NR XP_004339384.1 1257118 g64026 i0 76.7 0.885 30 7 45 0 16 105 134 163 XP_004339384.1 glycosyl hydrolase family 47 protein [Acanthamoeba castellanii str. Neff] diamond 177 50.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;