RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27695840 27695840 PRJNA946307_P_NODE_136444_length_168_cov_2.394958_g135570_i0 PRJNA946307 136444 168 2.394958 4.02352944 Oligohymenophorea 6020 SAR_Eukaryotes SAR_Eukaryotes 48.1 1.56e-4   NR CAD8056407.1 5886 g135570 i0 52.8 1.92857142857143 36 17 64.3 0 15 122 191 226 CAD8056407.1 unnamed protein product [Paramecium primaurelia] diamond 324 48.5 0.991752577319588 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium primaurelia
28383440 28383440 PRJNA946307_P_NODE_152866_length_164_cov_1.530435_g151992_i0 PRJNA946307 152866 164 1.530435 2.5099134 Pseudocohnilembus persalinus 266149 SAR_Eukaryotes SAR_Eukaryotes 71.6 8.18e-13   NR KRX02910.1 266149 g151992 i0 61.5 0.951219512195122 52 20 95.1 0 156 1 331 382 KRX02910.1 Protein kinase-like domain [Pseudocohnilembus persalinus] diamond 156 71.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Philasterida Pseudocohnilembidae Pseudocohnilembus Pseudocohnilembus persalinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;