RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Candidatus Raymondiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Raymondiibacteriota · 1 ✖

tax_clade 1

bioproject 1

  • PRJNA946307 · 1 ✖

analysis 1

  • diamond · 1 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29899143 29899143 PRJNA946307_P_NODE_113911_length_178_cov_1.496124_g113037_i0 PRJNA946307 113911 178 1.496124 2.66310072 Candidatus Raymondbacteria bacterium RifOxyA12_full_5 1817884 Bacteria Bacteria 76.3 2.39e-14   NR OGJ87545.1 1817884 g113037 i0 62.3 3.58988764044944 53 20 89.3 0 11 169 372 424 OGJ87545.1 MAG: hypothetical protein A2268_03840 [Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37] diamond 639 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Raymondiibacteriota         Candidatus Raymondbacteria bacterium RifOxyA12_full_50_37

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;