RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_phylum = "Candidatus Latescibacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA946307 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28800420 28800420 PRJNA946307_P_NODE_57927_length_210_cov_2.627329_g57053_i0 PRJNA946307 57927 210 2.627329 5.5173909 Bacteria 2 Bacteria Bacteria 57 2.17e-7   NR MBD3162773.1 2053570 g57053 i0 85.7 8.68571428571429 28 4 40 0 12 95 272 299 MBD3162773.1 helicase [Candidatus Latescibacterota bacterium] diamond 1824 57.4 0.993031358885017 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
31225924 31225924 PRJNA946307_P_NODE_142975_length_166_cov_3.153846_g142101_i0 PRJNA946307 142975 166 3.153846 5.23538436 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 46.6 5.24e-4   NR MSS72947.1 2053570 g142101 i0 55.6 0.650602409638554 36 16 65.1 0 57 164 6 41 MSS72947.1 SDR family oxidoreductase [Candidatus Latescibacterota bacterium] diamond 108 46.6 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
31637234 31637234 PRJNA946307_P_NODE_72336_length_198_cov_5.342282_g71462_i0 PRJNA946307 72336 198 5.342282 10.57771836 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 42.7 0.0209   NR MFA6109945.1 2053570 g71462 i0 80 0.757575757575758 25 5 37.9 0 83 9 27 51 MFA6109945.1 LamG domain-containing protein [Candidatus Latescibacterota bacterium] diamond 150 42.7 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium
31795158 31795158 PRJNA946307_P_NODE_137357_length_168_cov_1.621849_g136483_i0 PRJNA946307 137357 168 1.621849 2.72470632 Candidatus Latescibacterota bacterium 2053570 Bacteria Bacteria 52 7.27e-6   NR MCD6170773.1 2053570 g136483 i0 43.1 3.66071428571429 51 29 91.1 0 15 167 908 958 MCD6170773.1 RHS repeat protein [Candidatus Latescibacterota bacterium] diamond 615 52 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         Candidatus Latescibacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;