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contig_metadata

12 rows where analysis = "diamond", bioproject = "PRJNA946307" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 12 ✖

bioproject 1

  • PRJNA946307 · 12 ✖

analysis 1

  • diamond · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26645293 26645293 PRJNA946307_P_NODE_104321_length_182_cov_2.142857_g103447_i0 PRJNA946307 104321 182 2.142857 3.89999974 Methanobacterium paludis 868131 Archaea Archaea 85.5 2.17e-19   NR WP_013825963.1 868131 g103447 i0 73.2 2.76923076923077 56 15 92.3 0 169 2 78 133 WP_013825963.1 uL15m family ribosomal protein [Methanobacterium paludis] diamond 504 85.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis
27057151 27057151 PRJNA946307_P_NODE_71162_length_199_cov_2.973333_g70288_i0 PRJNA946307 71162 199 2.973333 5.91693267 Methanobacteriaceae archaeon 2099680 Archaea Archaea 64.3 4.92e-10   NR NYB51693.1 2099680 g70288 i0 93.9 0.49748743718593 33 2 49.7 0 100 2 48 80 NYB51693.1 NAD(P)/FAD-dependent oxidoreductase [Methanobacteriaceae archaeon] diamond 99 64.3 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
28478194 28478194 PRJNA946307_P_NODE_107846_length_180_cov_4.885496_g106972_i0 PRJNA946307 107846 180 4.885496 8.7938928 Methanobacterium sp. 2164 Archaea Archaea 94 4.149999999999999e-23   NR MDD1775128.1 2164 g106972 i0 87.5 3.2 48 6 80 0 144 1 1 48 MDD1775128.1 dinitrogenase iron-molybdenum cofactor biosynthesis protein [Methanobacterium sp.] diamond 576 94 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29046622 29046622 PRJNA946307_P_NODE_137628_length_168_cov_1.453782_g136754_i0 PRJNA946307 137628 168 1.453782 2.44235376 Methanobrevibacter sp. 66852 Archaea Archaea 56.6 1.73e-7   NR MDO5819915.1 66852 g136754 i0 60.9 1.64285714285714 46 14 75 1 165 40 195 240 MDO5819915.1 RNA ligase family protein [Methanobrevibacter sp.] diamond 276 56.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
29204653 29204653 PRJNA946307_P_NODE_81729_length_192_cov_6.356643_g80855_i0 PRJNA946307 81729 192 6.356643 12.20475456 Methanobacterium sp. 2164 Archaea Archaea 84 1.08e-19   NR MEN6592262.1 2164 g80855 i0 87 0.71875 46 6 71.9 0 20 157 1 46 MEN6592262.1 hypothetical protein [Methanobacterium sp.] diamond 138 84 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29236061 29236061 PRJNA946307_P_NODE_153669_length_164_cov_0.904348_g152795_i0 PRJNA946307 153669 164 0.904348 1.48313072 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 102 1.66e-24   NR OPY20746.1 1811675 g152795 i0 96.2 0.951219512195122 52 2 95.1 0 7 162 217 268 OPY20746.1 MAG: ferrous iron efflux protein F [Methanobacterium sp. PtaU1.Bin097] diamond 156 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
29962312 29962312 PRJNA946307_P_NODE_75511_length_197_cov_3.162162_g74637_i0 PRJNA946307 75511 197 3.162162 6.22945914 Methanobacteriaceae archaeon 2099680 Archaea Archaea 85.1 1.97e-18   NR NYB25845.1 2099680 g74637 i0 69.8 0.959390862944162 63 18 95.9 1 7 195 107 168 NYB25845.1 phosphoribosylanthranilate isomerase [Methanobacteriaceae archaeon] diamond 189 85.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
30373372 30373372 PRJNA946307_P_NODE_154432_length_164_cov_0.886957_g153558_i0 PRJNA946307 154432 164 0.886957 1.45460948 Methanobacterium sp. 2164 Archaea Archaea 85.1 8.87e-18   NR MDD1775540.1 2164 g153558 i0 79.6 0.896341463414634 49 10 89.6 0 148 2 316 364 MDD1775540.1 pyridoxal phosphate-dependent aminotransferase [Methanobacterium sp.] diamond 147 85.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
30380032 30380032 PRJNA946307_P_NODE_148212_length_165_cov_1.672414_g147338_i0 PRJNA946307 148212 165 1.672414 2.7594831 Methanobacterium 2160 Archaea Archaea 95.9 9.78e-22   NR MCE5214113.1 2164 g147338 i0 94.1 2.78181818181818 51 3 92.7 0 13 165 229 279 MCE5214113.1 AAA family ATPase [Methanobacterium sp.] diamond 459 95.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
31036745 31036745 PRJNA946307_P_NODE_128915_length_171_cov_2.147541_g128041_i0 PRJNA946307 128915 171 2.147541 3.67229511 Methanobacterium sp. PtaU1.Bin 2164 Archaea Archaea 70.5 1.25e-12   NR OPY19818.1 1811675 g128041 i0 86.8 1.33333333333333 38 5 66.7 0 157 44 233 270 OPY19818.1 MAG: 2-oxoglutarate synthase subunit KorB [Methanobacterium sp. PtaU1.Bin097] diamond 228 70.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. PtaU1.Bin097
31320895 31320895 PRJNA946307_P_NODE_170455_length_155_cov_4.113208_g169581_i0 PRJNA946307 170455 155 4.113208 6.3754724 Methanobacteriaceae archaeon 2099680 Archaea Archaea 97.8 3.0099999999999995e-23   NR NYB27019.1 2099680 g169581 i0 89.1 0.890322580645161 46 5 89 0 140 3 18 63 NYB27019.1 exodeoxyribonuclease III [Methanobacteriaceae archaeon] diamond 138 97.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32838100 32838100 PRJNA946307_P_NODE_139120_length_167_cov_2.508475_g138246_i0 PRJNA946307 139120 167 2.508475 4.18915325 Methanosphaera sp. 2666342 Archaea Archaea 92.8 2.98e-20   NR WP_292537504.1 2666342 g138246 i0 97.8 0.808383233532934 45 1 80.8 0 18 152 311 355 WP_292537504.1 formylmethanofuran dehydrogenase subunit A [Methanosphaera sp.] diamond 135 92.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;