RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Thermoproteota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28263672 28263672 PRJNA944406_P_NODE_61946_length_252_cov_1.346369_g60987_i0 PRJNA944406 61946 252 1.346369 3.39284988 root 1 Root_unresolved Root_unresolved 50.8 1.7e-5   NR MEM0120653.1 2250277 g60987 i0 46.7 1.72619047619048 60 30 69 1 240 67 65 124 MEM0120653.1 CBS domain-containing protein [Thermoprotei archaeon] diamond 435 50.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei       Thermoprotei archaeon
29709087 29709087 PRJNA944406_P_NODE_45650_length_267_cov_1.587629_g44691_i0 PRJNA944406 45650 267 1.587629 4.23896943 Thermoproteota archaeon 2056631 Archaea Archaea 160 2.5e-45   NR MDP9197000.1 2056631 g44691 i0 92.1 1 89 7 100 0 1 267 26 114 MDP9197000.1 nickel pincer cofactor biosynthesis protein LarC [Thermoproteota archaeon] diamond 267 160 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
30151440 30151440 PRJNA944406_P_NODE_27512_length_284_cov_1.459716_g26553_i0 PRJNA944406 27512 284 1.459716 4.14559344 Thermoproteota archaeon 2056631 Archaea Archaea 45.1 0.00214   NR MDQ6862856.1 2056631 g26553 i0 90 0.422535211267606 20 2 21.1 0 283 224 91 110 MDQ6862856.1 nuclear transport factor 2 family protein [Thermoproteota archaeon] diamond 120 45.1 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31352610 31352610 PRJNA944406_P_NODE_92096_length_245_cov_0.895349_g91137_i0 PRJNA944406 92096 245 0.895349 2.19360505 Thermoproteota archaeon 2056631 Archaea Archaea 130 4.609999999999999e-37   NR MDQ4015305.1 2056631 g91137 i0 94.9 0.722448979591837 59 3 72.2 0 2 178 64 122 MDQ4015305.1 hypothetical protein [Thermoproteota archaeon] diamond 177 130 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;