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contig_metadata

27 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 27 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 27 ✖

analysis 1

  • diamond · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14952692 14952692 PRJNA944406_P_NODE_60772_length_253_cov_1.500000_g59813_i0 PRJNA944406 60772 253 1.5 3.795 Geobacterales bacterium 3069300 Bacteria Bacteria 132 1.2e-34   NR HWJ18771.1 3069300 g59813 i0 91.4 1.6600790513834 70 6 83 0 2 211 337 406 HWJ18771.1 IS256 family transposase [Geobacterales bacterium] diamond 420 132 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales     Geobacterales bacterium
26778981 26778981 PRJNA944406_P_NODE_64021_length_251_cov_0.865169_g63062_i0 PRJNA944406 64021 251 0.865169 2.17157419 Bacteria 2 Bacteria Bacteria 76.3 5.11e-14   NR KRT66328.1 1640508 g63062 i0 45.6 2.86852589641434 79 37 94.4 2 238 2 218 290 KRT66328.1 MAG: FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Candidatus Dadabacteria bacterium CSP1-2] diamond 720 76.6 0.996083550913838 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium CSP1-2
26803707 26803707 PRJNA944406_P_NODE_67301_length_250_cov_1.666667_g66342_i0 PRJNA944406 67301 250 1.666667 4.1666675 Desulfobacterales bacterium 2044940 Bacteria Bacteria 93.2 6.39e-20   NR MCP4347920.1 2044940 g66342 i0 51.2 3.936 82 40 98.4 0 250 5 189 270 MCP4347920.1 IS701 family transposase [Desulfobacterales bacterium] diamond 984 93.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
26898836 26898836 PRJNA944406_P_NODE_107961_length_241_cov_0.916667_g107002_i0 PRJNA944406 107961 241 0.916667 2.20916747 Desulfobulbus propionicus 894 Bacteria Bacteria 60.1 2.45e-8   NR WP_015722870.1 894 g107002 i0 84.8 0.821576763485477 33 5 41.1 0 2 100 291 323 WP_015722870.1 hypothetical protein [Desulfobulbus propionicus] diamond 198 60.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus propionicus
27278268 27278268 PRJNA944406_P_NODE_29003_length_283_cov_1.276190_g28044_i0 PRJNA944406 29003 283 1.27619 3.6116177 Syntrophotalea acetylenica 29542 Bacteria Bacteria 58.5 9.24e-8   NR MDD4457008.1 29542 g28044 i0 44.3 0.742049469964664 70 36 74.2 1 60 269 170 236 MDD4457008.1 putative molybdenum carrier protein [Syntrophotalea acetylenica] diamond 210 58.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Syntrophotaleaceae Syntrophotalea Syntrophotalea acetylenica
27664117 27664117 PRJNA944406_P_NODE_90984_length_245_cov_0.895349_g90025_i0 PRJNA944406 90984 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 79 6.47e-15   NR MFC1835761.1 2202153 g90025 i0 50 5.93877551020408 80 40 98 0 241 2 258 337 MFC1835761.1 ATP-dependent RecD-like DNA helicase [Thermodesulfobacteriota bacterium] diamond 1455 79 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27720830 27720830 PRJNA944406_P_NODE_73744_length_249_cov_0.875000_g72785_i0 PRJNA944406 73744 249 0.875 2.17875 Geobacter sp. 46610 Bacteria Bacteria 117 2.18e-28   NR WP_298439051.1 46610 g72785 i0 65.9 1.97590361445783 82 28 98.8 0 247 2 1043 1124 WP_298439051.1 putative baseplate assembly protein [Geobacter sp.] diamond 492 117 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.
27941398 27941398 PRJNA944406_P_NODE_107905_length_241_cov_0.916667_g106946_i0 PRJNA944406 107905 241 0.916667 2.20916747 Geobacteraceae bacterium 2282154 Bacteria Bacteria 75.1 1.46e-13   NR KAF0217726.1 2282154 g106946 i0 41 0.970954356846473 78 46 97.1 0 1 234 275 352 KAF0217726.1 MAG: PAS/PAC sensor signal transduction histidine [Geobacteraceae bacterium] diamond 234 75.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium
28415088 28415088 PRJNA944406_P_NODE_44206_length_268_cov_2.307692_g43247_i0 PRJNA944406 44206 268 2.307692 6.18461456 Pelobacteraceae bacterium 3024407 Bacteria Bacteria 49.3 2.45e-4   NR MFA7405999.1 3024407 g43247 i0 57.5 1.42164179104478 40 17 44.8 0 122 3 73 112 MFA7405999.1 PAS domain S-box protein [Pelobacteraceae bacterium] diamond 381 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Pelobacteraceae   Pelobacteraceae bacterium
28572803 28572803 PRJNA944406_P_NODE_60307_length_253_cov_1.961111_g59348_i0 PRJNA944406 60307 253 1.961111 4.96161083 uncultured Desulfobacterium sp. 201089 Bacteria Bacteria 110 4.68e-26   NR SPD75420.1 201089 g59348 i0 62.5 0.948616600790514 80 30 94.9 0 253 14 929 1008 SPD75420.1 putative Serine/threonine protein kinase [uncultured Desulfobacterium sp.] diamond 240 110 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteriaceae Desulfobacterium uncultured Desulfobacterium sp.
28667712 28667712 PRJNA944406_P_NODE_71627_length_249_cov_1.698864_g70668_i0 PRJNA944406 71627 249 1.698864 4.23017136 Desulforegula conservatrix 153026 Bacteria Bacteria 91.3 6.25e-20   NR WP_027360242.1 153026 g70668 i0 74.5 0.614457831325301 51 12 61.4 1 93 245 1 50 WP_027360242.1 DNA (cytosine-5-)-methyltransferase [Desulforegula conservatrix] diamond 153 91.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulforegulaceae Desulforegula Desulforegula conservatrix
28793705 28793705 PRJNA944406_P_NODE_41787_length_271_cov_1.287879_g40828_i0 PRJNA944406 41787 271 1.287879 3.49015209 Geobacter sp. AOG1 1566346 Bacteria Bacteria 178 5.62e-54   NR WP_223907757.1 1566346 g40828 i0 85.9 1.92619926199262 85 12 94.1 0 269 15 57 141 WP_223907757.1 4Fe-4S dicluster domain-containing protein [Geobacter sp. AOG1] diamond 522 178 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. AOG1
28919970 28919970 PRJNA944406_P_NODE_43728_length_269_cov_1.459184_g42769_i0 PRJNA944406 43728 269 1.459184 3.92520496 Citrifermentans bremense 60035 Bacteria Bacteria 49.3 5.1e-5   NR WP_226377764.1 60035 g42769 i0 38 0.8810408921933092 79 41 83.6 3 227 3 10 84 WP_226377764.1 GNAT family N-acetyltransferase [Citrifermentans bremense] diamond 237 49.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Citrifermentans Citrifermentans bremense
29141357 29141357 PRJNA944406_P_NODE_16129_length_321_cov_1.733871_g15170_i0 PRJNA944406 16129 321 1.733871 5.56572591 Malonomonas rubra 57040 Bacteria Bacteria 79.7 2.44e-16   NR WP_072910218.1 57040 g15170 i0 42.3 1.69158878504673 104 50 97.2 4 8 319 7 100 WP_072910218.1 Hsp20/alpha crystallin family protein [Malonomonas rubra] diamond 543 79.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Malonomonas Malonomonas rubra
29235959 29235959 PRJNA944406_P_NODE_102709_length_242_cov_0.911243_g101750_i0 PRJNA944406 102709 242 0.911243 2.20520806 Geobacteraceae bacterium 2282154 Bacteria Bacteria 89.4 2.32e-20   NR HZV82819.1 2282154 g101750 i0 70.5 0.756198347107438 61 16 73.1 1 24 200 102 162 HZV82819.1 type II secretion system protein [Geobacteraceae bacterium] diamond 183 89.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium
29488299 29488299 PRJNA944406_P_NODE_70510_length_250_cov_0.870056_g69551_i0 PRJNA944406 70510 250 0.870056 2.17514 Syntrophobacter sp. 66700 Bacteria Bacteria 103 2.2699999999999994e-23   NR MEN6438702.1 66700 g69551 i0 61 1.968 82 32 98.4 0 246 1 773 854 MEN6438702.1 MG2 domain-containing protein [Syntrophobacter sp.] diamond 492 103 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter sp.
30214745 30214745 PRJNA944406_P_NODE_69392_length_250_cov_0.870056_g68433_i0 PRJNA944406 69392 250 0.870056 2.17514 Desulfuromonas sp. KJ2 892 Bacteria Bacteria 57.4 2.77e-7   NR WP_253960274.1 2919173 g68433 i0 43.7 0.852 71 40 85.2 0 37 249 124 194 WP_253960274.1 DUF3466 family protein [Desulfuromonas sp. KJ2020] diamond 213 57.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. KJ2020
30310227 30310227 PRJNA944406_P_NODE_66232_length_251_cov_0.865169_g65273_i0 PRJNA944406 66232 251 0.865169 2.17157419 Desulfobacterales bacterium 2044940 Bacteria Bacteria 59.3 5.36e-9   NR NIR13553.1 2044940 g65273 i0 47.5 0.729083665338645 61 32 72.9 0 67 249 12 72 NIR13553.1 DUF1599 domain-containing protein [Desulfobacterales bacterium] diamond 183 59.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium
30404865 30404865 PRJNA944406_P_NODE_106813_length_241_cov_1.476190_g105854_i0 PRJNA944406 106813 241 1.47619 3.5576179 Desulfobacterales bacterium S373 2044940 Bacteria Bacteria 90.1 1.31e-19   NR OEU52104.1 1869298 g105854 i0 56.2 0.908713692946058 73 32 90.9 0 221 3 3 75 OEU52104.1 MAG: hypothetical protein BA861_01000 [Desulfobacterales bacterium S3730MH5] diamond 219 90.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium S3730MH5
30436394 30436394 PRJNA944406_P_NODE_96613_length_244_cov_0.900585_g95654_i0 PRJNA944406 96613 244 0.900585 2.1974274 Geobacteraceae bacterium 2282154 Bacteria Bacteria 63.2 2.42e-9   NR HEY5973117.1 2282154 g95654 i0 49.2 1.57377049180328 65 29 77.5 3 49 237 349 411 HEY5973117.1 Ig-like domain-containing protein [Geobacteraceae bacterium] diamond 384 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae   Geobacteraceae bacterium
31289082 31289082 PRJNA944406_P_NODE_102055_length_242_cov_1.781065_g101096_i0 PRJNA944406 102055 242 1.781065 4.3101773 Geobacter sulfurreducens 35554 Bacteria Bacteria 98.2 5.03e-23   NR WP_214303090.1 35554 g101096 i0 59 0.966942148760331 78 32 96.7 0 9 242 100 177 WP_214303090.1 class I SAM-dependent methyltransferase [Geobacter sulfurreducens] diamond 234 98.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens
31890168 31890168 PRJNA944406_P_NODE_76017_length_248_cov_1.680000_g75058_i0 PRJNA944406 76017 248 1.68 4.1664 Malonomonas sp. 3050478 Bacteria Bacteria 89 1.86e-18   NR HEY5673792.1 3050478 g75058 i0 58.9 0.883064516129032 73 30 88.3 0 246 28 403 475 HEY5673792.1 PKD domain-containing protein [Malonomonas sp.] diamond 219 89 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geopsychrobacteraceae Malonomonas Malonomonas sp.
31953436 31953436 PRJNA944406_P_NODE_70157_length_250_cov_0.870056_g69198_i0 PRJNA944406 70157 250 0.870056 2.17514 Geobacter metallireducens 28232 Bacteria Bacteria 113 7.249999999999998e-30   NR WP_187148453.1 28232 g69198 i0 65.4 1.896 78 27 93.6 0 243 10 16 93 WP_187148453.1 hypothetical protein [Geobacter metallireducens] diamond 474 113 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter metallireducens
32206707 32206707 PRJNA944406_P_NODE_89518_length_245_cov_1.197674_g88559_i0 PRJNA944406 89518 245 1.197674 2.9343013 Syntrophorhabdaceae bacterium 2660714 Bacteria Bacteria 92 1.73e-19   NR HEY3278343.1 2660714 g88559 i0 53.1 6.93061224489796 81 38 99.2 0 2 244 481 561 HEY3278343.1 SBBP repeat-containing protein [Syntrophorhabdaceae bacterium] diamond 1698 92 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium
32238558 32238558 PRJNA944406_P_NODE_53298_length_260_cov_1.588235_g52339_i0 PRJNA944406 53298 260 1.588235 4.129411 Desulfovibrionaceae bacterium 2049043 Bacteria Bacteria 73.6 6.56e-13   NR MBQ7585133.1 2049043 g52339 i0 57.8 3.41538461538462 64 27 73.8 0 4 195 583 646 MBQ7585133.1 DEAD/DEAH box helicase [Desulfovibrionaceae bacterium] diamond 888 73.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae   Desulfovibrionaceae bacterium
32869585 32869585 PRJNA944406_P_NODE_68980_length_250_cov_0.870056_g68021_i0 PRJNA944406 68980 250 0.870056 2.17514 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 88.6 1.46e-19   NR HEY7534659.1 2202153 g68021 i0 48.1 1.908 77 40 92.4 0 250 20 111 187 HEY7534659.1 DUF1579 domain-containing protein [Thermodesulfobacteriota bacterium] diamond 477 88.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
32869597 32869597 PRJNA944406_P_NODE_85040_length_246_cov_1.381503_g84081_i0 PRJNA944406 85040 246 1.381503 3.39849738 Geobacter sp. 46610 Bacteria Bacteria 84.3 8.77e-17   NR WP_306534704.1 46610 g84081 i0 52.6 1.90243902439024 78 35 92.7 2 245 18 5 82 WP_306534704.1 HEAT repeat domain-containing protein [Geobacter sp.] diamond 468 84.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;