RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA944406" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA944406 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29867421 29867421 PRJNA944406_P_NODE_85131_length_246_cov_1.248555_g84172_i0 PRJNA944406 85131 246 1.248555 3.0714453 Mycoplasmataceae bacterium 2685873 Bacteria Bacteria 69.7 1.22e-11   NR MCK5867627.1 2685873 g84172 i0 40.2 3.73170731707317 87 46 98.8 2 246 4 4 90 MCK5867627.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Mycoplasmataceae bacterium] diamond 918 69.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae   Mycoplasmataceae bacterium
30088502 30088502 PRJNA944406_P_NODE_78092_length_248_cov_0.880000_g77133_i0 PRJNA944406 78092 248 0.88 2.1824 Mollicutes bacterium 37628 Bacteria Bacteria 121 1.9099999999999997e-30   NR HHU54807.1 37628 g77133 i0 71.1 3.01209677419355 83 23 99.2 1 246 1 43 125 HHU54807.1 asparagine--tRNA ligase [Mollicutes bacterium] diamond 747 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       Mollicutes bacterium
30253510 30253510 PRJNA944406_P_NODE_37172_length_275_cov_1.524752_g36213_i0 PRJNA944406 37172 275 1.524752 4.193068 Bacillati 1783272 Bacteria Bacteria 75.1 2.27e-13   NR MCK9234802.1 1898209 g36213 i0 44.9 3.33818181818182 78 43 85.1 0 260 27 118 195 MCK9234802.1 tail fiber domain-containing protein [Acholeplasmataceae bacterium] diamond 918 75.5 0.994701986754967 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;